PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15716A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CO-like | ||||||||
Protein Properties | Length: 431aa MW: 46681.2 Da PI: 7.6498 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 3e-06 | 12 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqq.llCedCllee.Hkg..Htvv 40 r+C +e+ ++ +C++C+ +lC +C H g H++v Oropetium_20150105_15716A 12 RRCGACESAPAAVHCRSCGGvFLCTSCDARPaHAGagHERV 52 79****************876********999987889875 PP | |||||||
2 | zf-B_box | 24.4 | 6.2e-08 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ Ht+vp+ Oropetium_20150105_15716A 52 VWVCEVCELAPAAVTCKADAAVLCAACDADIHEAnplarrHTRVPI 97 689*****************************77899999**9997 PP | |||||||
3 | CCT | 70.2 | 5.2e-24 | 291 | 334 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Oropetium_20150105_15716A 291 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 334 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.0025 | 9 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00225 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 10.466 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-6 | 51 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.88E-7 | 53 | 97 | No hit | No description |
SMART | SM00336 | 3.3E-9 | 55 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 8.3E-18 | 291 | 333 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 291 | 333 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MELHKYWGVG GRRCGACESA PAAVHCRSCG GVFLCTSCDA RPAHAGAGHE RVWVCEVCEL 60 APAAVTCKAD AAVLCAACDA DIHEANPLAR RHTRVPIAPI GSAAAVESML FGTGEAADDQ 120 KATEEHHNHQ HEHGHGHSLN LNVEAKDMKL DYLFSDLDPY LNVELPRFQH ADSVVPNGVA 180 AVELDFTGGI GGVKQSSYSS YTAATSLAHS GSSSEVGVVP DALCVGGGGH GSFELDFTRP 240 KPHQAYMPAY NTATPPSHSV SQVSSVDAAX XXXXXXXXXX XXXXXXXXEG REARLMRYRE 300 KRKNRRFEKT IRYASRKAYA ETRPRIKGRF AKRTDTDTDA DEASEIAVPT AAAAAASYML 360 DFGYSVVPSF XXXXXXXXXX ISSRSARRGA LLCCLIRHGT RCAERCTLYR SMMYRGRTTS 420 SNPVPCTYSF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15716A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243265 | 7e-48 | AK243265.1 Oryza sativa Japonica Group cDNA, clone: J100049E07, full insert sequence. | |||
GenBank | AP003579 | 7e-48 | AP003579.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0709F06. | |||
GenBank | AP014962 | 7e-48 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 7e-48 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CT837522 | 7e-48 | CT837522.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI009P15, full insert sequence. | |||
GenBank | CU406613 | 7e-48 | CU406613.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641209.1 | 1e-155 | zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A3S6H646 | 1e-163 | A0A3S6H646_9POAL; Constans-like protein | ||||
STRING | OPUNC06G21040.1 | 1e-162 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 5e-40 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15716A |