PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15601A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 301aa    MW: 33667.9 Da    PI: 8.1827
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15601AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.23.9e-50141521128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..........lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                lppGfrFhP+d+elv +yL+kk++g            +   +     ++ +vd++k+ePwdLp  +  + kewyf+s rd+kya
  Oropetium_20150105_15601A  14 LPPGFRFHPRDDELVLDYLAKKLHGGGgggagsgslvV---SiygcpTLIDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYA 94 
                                79**********************99977777666552...0455546999************6555689************** PP

                        NAM  70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                tg+r+nrat+sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+
  Oropetium_20150105_15601A  95 TGQRTNRATESGYWKATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 152
                                ***********************99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-604175IPR003441NAC domain
PROSITE profilePS5100554.23714175IPR003441NAC domain
PfamPF023651.8E-2515152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAVMNSLSMV EARLPPGFRF HPRDDELVLD YLAKKLHGGG GGGAGSGSLV VSIYGCPTLI  60
DVDLNKCEPW DLPDIACIGG KEWYFYSLRD RKYATGQRTN RATESGYWKA TGKDRPISRK  120
GLLVGMRKTL VFYQGRAPKG KKTEWVMHEF RMEGQGDPTK LPFKEDWVLC RVFYKSRATI  180
AKPPTESGSY NVDTATTSLP PLIDNYNISF DQPGSVQNLE GYEQVPCFSN NPSHQPSSSM  240
NVPMSSTMTA TDQEQHMGKS IKDVLSQFNR FEGNVKREAS QSNFSQDGFE YYTQLWNSFS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-481017611169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15601A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681432.10.0NAC domain-containing protein 21/22
SwissprotQ84TE65e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLK3XYG70.0K3XYG7_SETIT; Uncharacterized protein
STRINGSi006975m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-90NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]