PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15589A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 893aa    MW: 98824.8 Da    PI: 6.2862
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15589AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24114215199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L +g
  Oropetium_20150105_15589A 114 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 195
                                99*****************************86555544..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Oropetium_20150105_15589A 196 DSVLFI--WNDNNQLLLGIRRA 215
                                ******..7777778***9997 PP
2Auxin_resp119.33.1e-39240323183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  Oropetium_20150105_15589A 240 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 323
                                79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4899243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-42106229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-21113214No hitNo description
PfamPF023622.4E-22114215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098114216IPR003340B3 DNA binding domain
SMARTSM010194.1E-24114216IPR003340B3 DNA binding domain
PfamPF065072.2E-34240323IPR010525Auxin response factor
PfamPF023092.1E-8758847IPR033389AUX/IAA domain
SuperFamilySSF542773.47E-7758838No hitNo description
PROSITE profilePS5174523.318762846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEMEA QIPNYPNLPP  60
QLICQLHNVT MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGTANKQP TNYFCKTLTA  120
SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH GNDWKFRHIF RGQPKRHLLT  180
TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA  240
AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM  300
GTITGISDLD AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL  360
KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GLSMTPWMQP RLDTSLLGLQ  420
PDIYQTMATA AFQDPGKQAS ATILQFQQPP NIAGRAAQLL PSQVLQQLQP QFQQQTYMQN  480
VPESTIQGQS QTEFLKQQIQ RSQSFNEQKH QLQSQQQESQ HQQQSSQCMQ VSQHQQMQEQ  540
NNMTNFQPVS NALSAFSQLT SPSQSSPMAL QNVLPFSQAQ SFADTNMSSL SPSNASTMQN  600
TLRTFSSGAA SHLSMPRPTA IPVADPWSSK RVAVDSLLPS RPQVTSQIDQ LDSTPTSVPQ  660
SSALAPLPGR GCLVDQDGNS DPQNHLLFGV SIDSQSLLMQ GAIPNLQNGN DSTNIPYSTS  720
NFLNPSGNDF PLDHTLNSSG CLDDSGYMPC SDNSDQVTRA PSTFVKVYKS GTYGRSLDIT  780
RFSSYHELRR ELGRLFGLEG QLEDPLRSGW QLVFVDHEED VLLVGDDPWQ EFVNSVSCIK  840
ILSPQEVQQM GKGLELLTAP GRRLGSSCDD YVSRQESRSL STGIASVGSV EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-161734451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15589A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811094.10.0auxin response factor 17
RefseqXP_025811095.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A3L6RWL60.0A0A3L6RWL6_PANMI; Auxin response factor
STRINGPavir.Da00065.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]