PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15471A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 285aa    MW: 31355.7 Da    PI: 5.2873
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15471AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.1e-151350542
                               SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               +ks+r   + kRr+++lK A E+S+LCd+ vav+++s+
  Oropetium_20150105_15471A 13 DKSKRMAALRKRRKTLLKMAREISILCDIAVAVVVYSP 50
                               7999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.713149IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-12160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-17179IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-6323IPR002100Transcription factor, MADS-box
CDDcd002662.42E-18377No hitNo description
PfamPF003192.2E-131351IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVREKVKIQW VVDKSKRMAA LRKRRKTLLK MAREISILCD IAVAVVVYSP GKADPAIFPP  60
SEEDARGVLE TYRKLPNLSK ANLKIEDFLR ERIEKSIREL EKLRVRNRES EVCLALNDMS  120
LGRRSSYSGI SPDLVDAIKA SYLAHEQEVL RCIEYRMKSS QAQEEEEALV VPPPPFELAP  180
ALVADAPADL MAPLVAVPPV PVEAPEIEVP QLAVAVAPPV AVVANDAPPS PLLPGELDAE  240
PLNGSYVLAV VQAXXXXXXX XXXXPTPADV QRVMMEHGLF NPRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15471A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2226422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.28e-16M-type_MADS family protein