PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15466A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 205aa MW: 21139.6 Da PI: 9.0658 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 1.9e-30 | 79 | 137 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+H h+ Oropetium_20150105_15466A 79 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKAVLITTYEGTHSHQ 137 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-33 | 63 | 139 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-28 | 71 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.908 | 73 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-35 | 78 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-27 | 80 | 137 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSPARRALDG DSRASSDDGG GGGEAADDKR RSSGQHQDGT GTPERGENAA EGTSAAAAEA 60 PCRRARVSVR ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA 120 EDKAVLITTY EGTHSHQLPP AAAAMAKTTS AAAAMLLSGP AVSRDATAMF GHHHVAAPPP 180 QLFHSAPYVS AMGGATLSAS APQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-25 | 65 | 140 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15466A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014961 | 5e-50 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 5e-50 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440550.2 | 7e-81 | probable WRKY transcription factor 31 isoform X1 | ||||
Refseq | XP_021304147.1 | 6e-81 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9XEC3 | 1e-60 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A1B6P6B9 | 2e-79 | A0A1B6P6B9_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1B6P6D2 | 1e-79 | A0A1B6P6D2_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1E5W7H0 | 9e-80 | A0A1E5W7H0_9POAL; WRKY transcription factor 6 | ||||
STRING | OPUNC01G11770.1 | 2e-75 | (Oryza punctata) | ||||
STRING | Si022468m | 2e-77 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 7e-43 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15466A |