PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15425A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TALE | ||||||||
Protein Properties | Length: 300aa MW: 32636.8 Da PI: 5.2913 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.2e-09 | 230 | 263 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ +LA+ +gL+ +q+ +WF N+R ++ Oropetium_20150105_15425A 230 WPYPTEDDKVRLATMTGLDPKQINNWFINQRKRH 263 59*****************************885 PP | |||||||
2 | ELK | 31 | 5.5e-11 | 183 | 204 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Oropetium_20150105_15425A 183 ELKEMLLKKYSGSLSRLRSEFL 204 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.0E-20 | 44 | 88 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.6E-20 | 46 | 86 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.3E-24 | 92 | 143 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.6E-21 | 96 | 142 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.0E-5 | 183 | 204 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.4E-8 | 183 | 204 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.441 | 183 | 203 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.455 | 203 | 266 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-13 | 205 | 270 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-19 | 205 | 275 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 208 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.75E-12 | 215 | 267 | No hit | No description |
Pfam | PF05920 | 3.2E-16 | 223 | 262 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 241 | 264 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEDLYSIHPG ISRAGAAASE ASGVAGSPPP AAPPPPPPPA DLTELVKAQI AGHPRYPTLL 60 SAYIECRKVG APPEVAALLE EIGRERRAAA SAAGEVGLDP ELDEFMDAYC RVLERYKEEL 120 SRPLDEAASF LSSVRLQLGS LCGAAASSLS DEMVGSSEDE PCSGDTDATD LGQEHSSRLA 180 ERELKEMLLK KYSGSLSRLR SEFLKKRKKG KLPKDARSAL MDWWNTHYRW PYPTEDDKVR 240 LATMTGLDPK QINNWFINQR KRHWKPSEDM RFALMEGVTG GIGSSSGTTL YFDTGTIGP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 207 | LRSEFLKKRK |
2 | 204 | 208 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15425A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF457118 | 0.0 | AF457118.1 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a) mRNA, complete cds. | |||
GenBank | BT085252 | 0.0 | BT085252.1 Zea mays full-length cDNA clone ZM_BFb0343E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105084.1 | 1e-169 | liguleless 4 | ||||
Swissprot | Q9FP29 | 1e-147 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0A9BTH0 | 1e-174 | A0A0A9BTH0_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G094241_P01 | 1e-168 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-67 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15425A |
Publications ? help Back to Top | |||
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