PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15287A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 950aa    MW: 109088 Da    PI: 7.6863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15287AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.51.1e-1061174871374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL++cA+av+++d +la  l+ ++++++s dgd +qRla+y++ +L+arl + +s+ y +l +++ s    +++++a++lf
  Oropetium_20150105_15287A 117 LRSLLIHCAQAVAASDRQLAGDLIRKIRQHSSADGDCNQRLAFYLVDGLEARLDGIGSKAYYKLMAKRVS---DENVIKAYNLF 197
                                689****************************************************999999988888887...6889999**** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                   +P+++ s+  +Nq++ ea  g++rvHi+Df+i  G+QWp+L+q++a+  e +p+lRiTg++ p++g    e +ee g+rLa
  Oropetium_20150105_15287A 198 LASCPFYRTSYTFTNQTVIEASRGKSRVHIVDFGICFGFQWPSLIQQFAEL-EAQPKLRITGIDMPRPGfePLEIIEEAGKRLA 280
                                *************************************************96.778*************9999999********* PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                ++A+ ++vpfe++  +++r+e++++e+L+++++E+l++n+++++++l de+ +++s+rd+vLk++++++P+++++   + +++s
  Oropetium_20150105_15287A 281 DYAKMFNVPFEYQG-ISSRFEAIQIEDLNIEEDEVLIINCMYRMKNLGDETIAMNSARDRVLKMMRRMNPQILILGIVNGSYSS 363
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + Fl+rf e + +ys+lfd+l+a++pr++e r+++Er l++r++ nvvacegaer+er et+++W+ r  +aGF++++++ ++ 
  Oropetium_20150105_15287A 364 PFFLTRFKEVMFHYSSLFDMLDANVPRDDEVRKMLERGLFARDALNVVACEGAERIERPETYKQWQVRCLKAGFEQLHVDPSVL 447
                                ********************************************************************************9987 PP

                       GRAS 335 k.qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + ++k+  ++++ + +  +e+sg+l++gWk+r + ++S W+
  Oropetium_20150105_15287A 448 NlTIKMKKEMYH-EDFVADEDSGWLLQGWKGRVIHAISKWK 487
                                626666666666.66*************************8 PP
2GRAS365.86.1e-1125779472374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                + lL++cA+a++s++   a++lL+++++++sp+gd ++R+a yf+  L+arla+++s++yk+l ++++s   + + l+a+++f 
  Oropetium_20150105_15287A 577 QALLIQCAQAIASNNYPYASELLKTIRNHSSPYGDGTRRMAVYFADSLEARLAGTGSQIYKTLMAKRAS---VRDMLKAYHFFI 657
                                679************************************************************999999...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                 ++P++k+++   N++I++ +eg   vHiiDf+i+ G+QWp+L+q La+R++gpp+lRiTg++ p++g   ++++ e g+rLa+
  Oropetium_20150105_15287A 658 AACPFVKVAYYFSNKTIVNVLEGRPIVHIIDFGIMFGFQWPSLIQRLAKREGGPPKLRITGIDVPDPGlhPRKTIDEAGKRLAE 741
                                ******************************************************************99999************* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +Ae ++vpfe++  +a+r+e++++e+++++++E+l++n+ +++++l de+ +++s+rd+vL  +k+++P+v+++   + +++s+
  Oropetium_20150105_15287A 742 YAEMFNVPFEYHG-IASRWENIRVEDISINKDEVLIINCLHHIENLSDETEDMDSARDRVLCNMKRMNPEVLILGIVNGSYSSP 824
                                *************.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 Fl rf e l y+s+lfd+l+++++r +e+r+ vE++llg ++ nvva egaer+e+ e++++Wr r ++aGFk++p+++ + k
  Oropetium_20150105_15287A 825 FFLPRFRELLFYFSSLFDMLNTTVARSHEARVLVEKHLLGSNVLNVVAFEGAERIEKPESYKQWRIRSHKAGFKQLPVNQAILK 908
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                      ++ + + + + e+sg+l++gWk+r +++vS+W+
  Oropetium_20150105_15287A 909 RSTEKKEELYHEDFVISEDSGWLLQGWKGRIMYAVSSWK 947
                                **********899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.29891467IPR005202Transcription factor GRAS
PfamPF035143.7E-104117487IPR005202Transcription factor GRAS
PROSITE profilePS5098563.821550927IPR005202Transcription factor GRAS
PfamPF035142.1E-109577947IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MLSICRLTTK AKVGERNRFE IFGVTNHRKH PYIRDDLSAL GVRSSAITSC EIPRHEKFDI  60
VLICYDDRES FTETINLRKA MTRVNNSSIG QGKVHSQCQQ KLQSKTKRLN SKEVVDLRSL  120
LIHCAQAVAA SDRQLAGDLI RKIRQHSSAD GDCNQRLAFY LVDGLEARLD GIGSKAYYKL  180
MAKRVSDENV IKAYNLFLAS CPFYRTSYTF TNQTVIEASR GKSRVHIVDF GICFGFQWPS  240
LIQQFAELEA QPKLRITGID MPRPGFEPLE IIEEAGKRLA DYAKMFNVPF EYQGISSRFE  300
AIQIEDLNIE EDEVLIINCM YRMKNLGDET IAMNSARDRV LKMMRRMNPQ ILILGIVNGS  360
YSSPFFLTRF KEVMFHYSSL FDMLDANVPR DDEVRKMLER GLFARDALNV VACEGAERIE  420
RPETYKQWQV RCLKAGFEQL HVDPSVLNLT IKMKKEMYHE DFVADEDSGW LLQGWKGRVI  480
HAISKWKPNT SASSEAMDSH ESCEINSNIT LDYINLLMEE HTDEKISTYH QYDALEAMEK  540
PFYDILGQTE LYKCRQNVRN KGYDQGLDKR QESVDLQALL IQCAQAIASN NYPYASELLK  600
TIRNHSSPYG DGTRRMAVYF ADSLEARLAG TGSQIYKTLM AKRASVRDML KAYHFFIAAC  660
PFVKVAYYFS NKTIVNVLEG RPIVHIIDFG IMFGFQWPSL IQRLAKREGG PPKLRITGID  720
VPDPGLHPRK TIDEAGKRLA EYAEMFNVPF EYHGIASRWE NIRVEDISIN KDEVLIINCL  780
HHIENLSDET EDMDSARDRV LCNMKRMNPE VLILGIVNGS YSSPFFLPRF RELLFYFSSL  840
FDMLNTTVAR SHEARVLVEK HLLGSNVLNV VAFEGAERIE KPESYKQWRI RSHKAGFKQL  900
PVNQAILKRS TEKKEELYHE DFVISEDSGW LLQGWKGRIM YAVSSWKPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5412394825382Protein SCARECROW
5b3h_A2e-5412394824381Protein SCARECROW
5b3h_D2e-5412394824381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15287A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693385.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
SwissprotO809331e-151SCL9_ARATH; Scarecrow-like protein 9
TrEMBLJ3M3A20.0J3M3A2_ORYBR; Uncharacterized protein
STRINGOB05G10760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-154GRAS family protein