PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15189A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 689aa    MW: 73404.2 Da    PI: 6.5077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15189AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.91.8e-1273206812374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl 83 
                                 +lLl+cAe v++++l  a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+s+ +  +   s+++aa+++
  Oropetium_20150105_15189A 320 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPASTPAAARiiNSRVAAAFQV 403
                                579************************************************************999999888888899999*** PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f+ +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++
  Oropetium_20150105_15189A 404 FNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSD 483
                                ******************************************************************....************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                fA++lg+pfef++ va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++h s+
  Oropetium_20150105_15189A 484 FADTLGLPFEFRA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SG 559
                                *************.7*************************9..999999999999....**********************.89 PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF++++l  +aa+
  Oropetium_20150105_15189A 560 SFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGFRAASLAGSAAA 642
                                9****************************************************988887.************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Oropetium_20150105_15189A 643 QASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 681
                                **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.364293661IPR005202Transcription factor GRAS
PfamPF035146.2E-125320681IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MGSSSLLLFP SSSSAASAPQ SYSSHAHAHA STSSSSHSLL PPLPSSSSSS AQQQQDHLLL  60
HYLHHLDHQY DAAAMVRKRP APDNVDLPPP RRHVTGDLSD VTAAASGGAP QPPLNPSPAS  120
AQLPALPTQL QLPAFQHQHQ QQHAAAVEVV DLAAAPPGEV TAASTTAWVD GIIRDIIGSS  180
GAAVSVAQLI QNVREIIHPC NPGLASLLEL RLRSLLTASS DPAALPHHQH HPALIHHHGA  240
PPAAAPGVAA LPPPPPSLPA DKQHSRHEEE PAPPQSPKEP TVEETAAAAA XXXXXXXXXX  300
KERXXXXXXX XXXXXGLHLL TLLLQCAESV NADNLDDAHQ TLLEIAELAT PFGTSTQRVA  360
AYFAEAMSAR LVSSCLGLYA PLPASTPAAA RIINSRVAAA FQVFNGISPF VKFSHFTANQ  420
AIQEAFERED RVHIVDLDIM QGLQWPGLFH ILASRPGGPP RVRLTGLGAS MEALEATGKR  480
LSDFADTLGL PFEFRAVAEK AGNVDPEKLG VTRREAVAVH WLHHSLYDVT GSDSNTLWLI  540
QRLAPKVVTM VEQDLSHSGS FLARFVEAIH YYSALFDSLD ASYGEDSPER HVVEQQLLSR  600
EIRNVLAVGG PARSGDVKFG SWREKLAQSG FRAASLAGSA AAQASLLLGM FPSDGYTLVE  660
ENGALKLGWK DLCLLTASAW RPIQSAGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.032568224379Protein SCARECROW
5b3h_D0.032568224379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}.
UniProtProbable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15189A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636820.0BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620600.10.0protein SCARECROW 2
SwissprotA2ZHL00.0SCR2_ORYSI; Protein SCARECROW 2
SwissprotQ2QYF30.0SCR2_ORYSJ; Protein SCARECROW 2
TrEMBLA0A0E0RD240.0A0A0E0RD24_ORYRU; Uncharacterized protein
STRINGORUFI12G01460.10.0(Oryza rufipogon)
STRINGOS12T0122000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Kamiya N, et al.
    Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis.
    Plant Cell Physiol., 2003. 44(9): p. 875-83
    [PMID:14519768]
  2. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]
  3. Kaur P, et al.
    Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.
    Funct. Integr. Genomics, 2008. 8(4): p. 375-86
    [PMID:18543009]
  4. Sazuka T, et al.
    A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.
    Plant J., 2009. 60(2): p. 227-41
    [PMID:19682283]
  5. Fan T, et al.
    Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
    PLoS ONE, 2015. 10(5): p. e0125833
    [PMID:26023934]
  6. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  7. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]