PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15111A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25180.8 Da PI: 9.7329 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.3 | 1.3e-18 | 12 | 136 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk.rk.nratk 79 +p+Gf+F Pt el+ +yL++ v+gk+++ ++ + +d+y+++P L +++++ + + wyf + ++ k+ +++ + +r+ Oropetium_20150105_15111A 12 VPAGFHFTPTLAELIRCYLNPWVAGKPVDKSTGlVCLADVYSADPDALTRRFRQwGYRgVWYFLCVARWKAGNKRkKFsRRVEG 95 589************************88866647777**********965555333448999999998888644133155888 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g W+ g++k+v + gl + L f ra+ + kt W+m+e + Oropetium_20150105_15111A 96 GGAWRGIGTSKPVGR------GLGQRLGFE-YRAKWSAKTVWIMEEIS 136 99***********88......566667774.5788889*******976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-22 | 7 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.593 | 12 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-12 | 13 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MQELMPALRP SVPAGFHFTP TLAELIRCYL NPWVAGKPVD KSTGLVCLAD VYSADPDALT 60 RRFRQWGYRG VWYFLCVARW KAGNKRKKFS RRVEGGGAWR GIGTSKPVGR GLGQRLGFEY 120 RAKWSAKTVW IMEEISTSLA AAADGVGVKV VCKVYHPRKK DSSAAVAAAD PDEEEETNEI 180 GCKRPASDEY DEEAVRKRAK MDGLDECPAA TRSAITTHQM GMRRPPT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15111A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978357.1 | 2e-45 | NAC domain-containing protein 26 | ||||
TrEMBL | A0A368S1U2 | 2e-44 | A0A368S1U2_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YCR3 | 6e-45 | K3YCR3_SETIT; Uncharacterized protein | ||||
STRING | Si012013m | 1e-45 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11474 | 18 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 6e-11 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15111A |