PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15103A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 395aa    MW: 43017.6 Da    PI: 6.3805
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15103AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.92.9e-719039493325
                       GRAS  93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                                +++lt+N+aIlea+ege+ vH++D++  + +++QW+aL++a+  R++gpp+lRiT+v++    ske l +++  La+  e++++
  Oropetium_20150105_15103A  90 LAFLTTNHAILEAMEGERFVHVVDLSgpAANPVQWIALFHAFCGRRGGPPHLRITAVHD----SKEFLANMAGVLARESEAFDI 169
                                689**********************866899****************************....9******************** PP

                       GRAS 175 pfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll........................................ 214
                                pf+f++ v+ rl++l++++L    rv++gEala+++v qlhrll                                        
  Oropetium_20150105_15103A 170 PFQFDA-VEARLDELDPDALrrvlRVRSGEALAISVVAQLHRLLaaddaaanrqrhgngggggsscltplqiiaarssprsfge 252
                                ******.799*******99876668888******************************************************** PP

                       GRAS 215 .................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                                                                 +++ ++++  +++L++v+ lsPk++vv+e ea+hn++ F erf eal+yy+
  Oropetium_20150105_15103A 253 llerelntrlqlspdspsvlsspqspaglavapQRPPATTK-LRSFLSAVRALSPKIMVVTEPEANHNAAAFQERFDEALNYYA 335
                                *******************************9655555555.899*************************************** PP

                       GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                +lfd+le + +++  er+ vEr +lg+ei+ vva egaer+erhe+l++W +r+e+aG++
  Oropetium_20150105_15103A 336 SLFDCLERS-SAAVAERARVERLVLGEEIRGVVAREGAERKERHERLAQWARRMERAGME 394
                                ******999.6788********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.4721395IPR005202Transcription factor GRAS
PfamPF035141.0E-6890394IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLQQEEMVSS SATSSPASSL YSPSPHGGYV GSWVQELTSD QQSVRLVGLL YQCAAEVATG  60
AFDNANFYLE QITQLASLDA PHTLHRLAAL AFLTTNHAIL EAMEGERFVH VVDLSGPAAN  120
PVQWIALFHA FCGRRGGPPH LRITAVHDSK EFLANMAGVL ARESEAFDIP FQFDAVEARL  180
DELDPDALRR VLRVRSGEAL AISVVAQLHR LLAADDAAAN RQRHGNGGGG GSSCLTPLQI  240
IAARSSPRSF GELLERELNT RLQLSPDSPS VLSSPQSPAG LAVAPQRPPA TTKLRSFLSA  300
VRALSPKIMV VTEPEANHNA AAFQERFDEA LNYYASLFDC LERSSAAVAE RARVERLVLG  360
EEIRGVVARE GAERKERHER LAQWARRMER AGMER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1287202108217Protein SCARECROW
5b3h_A2e-1287202107216Protein SCARECROW
5b3h_D2e-1287202107216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15103A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-38scarecrow-like 3