PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15098A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 370aa    MW: 41964.8 Da    PI: 7.1334
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15098AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS206.91.1e-6312327110374
                       GRAS 110 ervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                                + vHiiD++  + ++ QW+ L++a+  Rp+g+p lR+T+v++    ++  l  t   L++ Ae+l++ f+f+  v  rle+l++
  Oropetium_20150105_15098A  12 QFVHIIDLSgsAAHPWQWLKLMRAFHRRPQGAPDLRVTVVHD----DRVFLADTFALLRERAESLNMAFSFHG-VLGRLEALDY 90 
                                67******633789****************************....9**************************.7999****99 PP

                       GRAS 192 eeLrvkp....gEalaVnlvlqlhrll.........................................desvsles..erdevL 228
                                 +L+       g a a +++lq+hrll                                             +l      +++ 
  Oropetium_20150105_15098A  91 GNLHAALemkcGYARAFSCALQMHRLLaveddattssnaglvqpqvmrhhhrhspmtplspfapttpsP--SCLVPppLLTRFQ 172
                                98854444445***************************************************9988541..33333346789** PP

                       GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres......eerikvErellgreivnvvacegaerr 306
                                ++v+   Pk++ vveqea+hns+++  rf eal+yy+alfd+l+  ++re+       er+ vEr+llg+ei++++   g+er 
  Oropetium_20150105_15098A 173 HAVRAAAPKILAVVEQEASHNSPDLTVRFEEALHYYAALFDALHDRAGREDchcqvqAERAQVERFLLGEEIKDLLVRDGTERH 256
                                *******************************************9999999888988899************************* PP

                       GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                                erhe +++W +r+ +aGF+pv+ls+ a ++a+  lrk+  +gy+  ++    ++l+l+  +rpL++vSaWr
  Oropetium_20150105_15098A 257 ERHELFHQWAQRMLNAGFGPVQLSYVARMEADEELRKCRLKGYENTQSrghMNCLLLCRDERPLYAVSAWR 327
                                *******************************************9886656689*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.5111304IPR005202Transcription factor GRAS
PfamPF035143.9E-6112327IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSIDLNIFFI LQFVHIIDLS GSAAHPWQWL KLMRAFHRRP QGAPDLRVTV VHDDRVFLAD  60
TFALLRERAE SLNMAFSFHG VLGRLEALDY GNLHAALEMK CGYARAFSCA LQMHRLLAVE  120
DDATTSSNAG LVQPQVMRHH HRHSPMTPLS PFAPTTPSPS CLVPPPLLTR FQHAVRAAAP  180
KILAVVEQEA SHNSPDLTVR FEEALHYYAA LFDALHDRAG REDCHCQVQA ERAQVERFLL  240
GEEIKDLLVR DGTERHERHE LFHQWAQRML NAGFGPVQLS YVARMEADEE LRKCRLKGYE  300
NTQSRGHMNC LLLCRDERPL YAVSAWRPWP LEASASVVSV NGQHQHQISS SAWTWPQEQA  360
ARVHINFTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-1514327111375GRAS family transcription factor containing protein, expressed
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15098A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183060.12e-89uncharacterized protein LOC100501406
TrEMBLA0A1D6QHE21e-102A0A1D6QHE2_MAIZE; Scarecrow-like protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-57scarecrow-like 3