PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15029A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 410aa MW: 45134.8 Da PI: 8.3402

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15029A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	130	160	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le Oropetium_20150105_15029A 130 AKTIRRLAQNREAARKSRLRKKAYIQQLESS 160 6889************************963 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-5	127	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.898	129	173	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.6E-9	130	160	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.47E-7	131	165	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-8	131	172	No hit	No description
PROSITE pattern	PS00036	0	134	149	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.6E-29	211	284	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGETSSSSSH SRQDPCVLGS YGFHGAMGNS TPPASFFLPH CRYNCCCNGY SKAASYTGHV 60 PILAYEVASH TQDSTDSESS SKNNSNHSAD QRGPSMANMA SQFDQASKQQ PQLKNMSTSS 120 THRTGKNLDA KTIRRLAQNR EAARKSRLRK KAYIQQLESS KVKLAQMEQD IQRARAQGLL 180 LGGAPGANIS SGAAMFDMEY ARWLDDHCRR MAELHGALNA HLQDGELRAI VDDTLTHHDE 240 LFRLKAMAAK SDVFHLITGV WVSPAERCYL WMGGFRPSDL LKTLLPQLDP LTDQQVVGIC 300 NLQQSSQQAE EALSQGLEQL HQSLASTMAG GSVTEDPNTS FMGQMALALS KLSNLEGFVI 360 QADNLRQQTL HQMHRILTVR QAARCFLAIG EYHNRLRALS SLWASRPRE*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGETSSSSSH SRQDPCVLGS YGFHGAMGNS TPPASFFLPH CRYNCCCNGY SKAASYTGHV  60
PILAYEVASH TQDSTDSESS SKNNSNHSAD QRGPSMANMA SQFDQASKQQ PQLKNMSTSS  120
THRTGKNLDA KTIRRLAQNR EAARKSRLRK KAYIQQLESS KVKLAQMEQD IQRARAQGLL  180
LGGAPGANIS SGAAMFDMEY ARWLDDHCRR MAELHGALNA HLQDGELRAI VDDTLTHHDE  240
LFRLKAMAAK SDVFHLITGV WVSPAERCYL WMGGFRPSDL LKTLLPQLDP LTDQQVVGIC  300
NLQQSSQQAE EALSQGLEQL HQSLASTMAG GSVTEDPNTS FMGQMALALS KLSNLEGFVI  360
QADNLRQQTL HQMHRILTVR QAARCFLAIG EYHNRLRALS SLWASRPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15029A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828229.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	1e-180	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2S3ICM0	0.0	A0A2S3ICM0_9POAL; Uncharacterized protein
STRING	Si014861m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-115	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15029A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]