PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15010A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 29302.6 Da PI: 7.7681 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.8 | 2.5e-29 | 36 | 126 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v Oropetium_20150105_15010A 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEVGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVV 119 99***************************9666668889********************************************* PP EEEE-SS CS B3 81 vFkldgr 87 F++++ Oropetium_20150105_15010A 120 HFERMRG 126 ***7754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-40 | 31 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-29 | 33 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.09E-28 | 34 | 126 | No hit | No description |
Pfam | PF02362 | 8.8E-27 | 36 | 139 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 36 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-22 | 36 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAMNHLSQEY PQAWPWGVAM YSNLHFHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLSGDSGE KGLILSFEDE VGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH 120 FERMRGLGIG DRLFIGFRRR GESATAAVSP LPAVRVVATG QSAGEQQPWS PMCYSTSGSY 180 PNSPANSCAY RHSVDHDHSN TPRTGESSAA SVPSRRLRLF GVNLDCGPEP EAETATGMYG 240 YMHQSSYAST FPEPNNWSSP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-51 | 31 | 140 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-51 | 31 | 140 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15010A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827830.1 | 1e-142 | B3 domain-containing protein Os11g0156000-like isoform X2 | ||||
Swissprot | Q53QI0 | 1e-124 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A3L6PJV1 | 1e-142 | A0A3L6PJV1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ha01761.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 2e-62 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15010A |
Publications ? help Back to Top | |||
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