PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_14936A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 402aa MW: 42617.8 Da PI: 8.7527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14936A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	193	216	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dCg++F ++L+ H t H Oropetium_20150105_14936A 193 FPCTDCGEVFLKAESLELHKATrH 216 89*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.847	193	221	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	195	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.61E-10	218	400	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.9E-6	219	338	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDAVTSQGKD VSRTARKKKP SQSWMAMVLY NPSYSSSSRK SRAPPPPAVA PAAEGKTNGD 60 NTQNSGGDRK KRSVSISRSM SMACAGSICS TKESAVTSCR GSGGATRSAS SRSLSDAAAK 120 AISATSSFNS ETTAATTVVT ATSSSSSPPS SALSSPLSSF RGVVQVRNLS GCYYECHSVF 180 DPARSLIGAA AAFPCTDCGE VFLKAESLEL HKATRHAVSE LGPDDTSRNI VEIIFQSSWL 240 RKQQQAPAVC KIERILKVQS GERTVKRFEQ YKESIKERAR NSNDEGKKNA RCVADGNELL 300 RFHCTTFTCA LGAAGGTALC RAPAAQCRLC GIIRDGFRVV AGRVKRATTA DTEPSDHQDS 360 DDCDSVSPCS SEGGVYSDLD ELFVFNPRAI LPCFVVIYSG Y*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDAVTSQGKD VSRTARKKKP SQSWMAMVLY NPSYSSSSRK SRAPPPPAVA PAAEGKTNGD  60
NTQNSGGDRK KRSVSISRSM SMACAGSICS TKESAVTSCR GSGGATRSAS SRSLSDAAAK  120
AISATSSFNS ETTAATTVVT ATSSSSSPPS SALSSPLSSF RGVVQVRNLS GCYYECHSVF  180
DPARSLIGAA AAFPCTDCGE VFLKAESLEL HKATRHAVSE LGPDDTSRNI VEIIFQSSWL  240
RKQQQAPAVC KIERILKVQS GERTVKRFEQ YKESIKERAR NSNDEGKKNA RCVADGNELL  300
RFHCTTFTCA LGAAGGTALC RAPAAQCRLC GIIRDGFRVV AGRVKRATTA DTEPSDHQDS  360
DDCDSVSPCS SEGGVYSDLD ELFVFNPRAI LPCFVVIYSG Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14936A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828324.1	1e-133	uncharacterized protein LOC112903299
TrEMBL	A0A3L6PI09	1e-134	A0A3L6PI09_PANMI; Uncharacterized protein
STRING	Sb05g004260.1	1e-128	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-47	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14936A