PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14882A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 288aa    MW: 31756.1 Da    PI: 4.5597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14882AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.12.1e-20211684128
                        NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk..rknr.atk.... 79 
                                 ++F+Ptd ++v +yL +++ g +++ e+++ e+d +++ Pw+L  ++ +++ ++ +fF++ +k +++g+  r +r +t+    
  Oropetium_20150105_14882A  21 SYKFEPTDADIVAFYLLPRALGLPTSHERAVVEADPLSCPPWELLrRNGHEGGDHAFFFVPPRKLTKNGNvaRGSRvVTAvgeg 104
                                689*********************999999**************734555566799****999988876544778844335666 PP

                        NAM  80 ..sgyWkatgk.dkevlsk.....kgel.....vglkktLvfy....kgrapkgektdWvmheyrl 128
                                  +g+W  +   d++++       +  +     +  k  L++y    +g+++kg+ + Wvmhey++
  Oropetium_20150105_14882A 105 gvQGRWYGQKAqDEQLTLVraggaG--EdvvvvTFRKYNLTYYcdepDGDKKKGTPSGWVMHEYQI 168
                                66999*8554415555444556541..145565677889****999889***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-2312175IPR003441NAC domain
PROSITE profilePS5100522.92718183IPR003441NAC domain
PfamPF023657.4E-1321168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTEACRFRFD AGDDQPPLAS SYKFEPTDAD IVAFYLLPRA LGLPTSHERA VVEADPLSCP  60
PWELLRRNGH EGGDHAFFFV PPRKLTKNGN VARGSRVVTA VGEGGVQGRW YGQKAQDEQL  120
TLVRAGGAGE DVVVVTFRKY NLTYYCDEPD GDKKKGTPSG WVMHEYQIVD PPMTAVLARV  180
KVADRVTKVY HGKKRKATAA ATDEANQAIV AYQQEIDHNN VDGYDMEAPV ASYMDLLQSG  240
QGGDDDYSFV DESNNYATMD EILNPSYNDF NQGYDDAQNY SNYGVAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14882A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449098.11e-54NAC domain-containing protein 41
STRINGSb05g004870.14e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-10NAC domain containing protein 28