PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14787A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16269.7 Da PI: 11.6641 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.3 | 4.3e-14 | 43 | 89 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 + G r+++ +grW+Ae+r p++ rkr ++g+fgt++eAa a++ a ++ Oropetium_20150105_14787A 43 FVGTRRRE-WGRWAAELRMPRT---RKRLWIGTFGTPKEAAHAYDGAIFCF 89 56667666.**********965...4*******************887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.994 | 42 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-15 | 42 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-20 | 42 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-18 | 43 | 105 | No hit | No description |
PRINTS | PR00367 | 1.2E-6 | 43 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-21 | 43 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-10 | 44 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAAAVALMSS SGDASKVNKK SCRRSISSRN SATTPATRKN GGFVGTRRRE WGRWAAELRM 60 PRTRKRLWIG TFGTPKEAAH AYDGAIFCFY GDHVPRIRKL NFPTAPRPNI PEDVRAGLTV 120 ANIKAIAEKY AHSLADFVPP PRPPPTPV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14787A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154175.1 | 2e-37 | ethylene-responsive transcription factor ERF015-like | ||||
TrEMBL | A0A287WH14 | 1e-38 | A0A287WH14_HORVV; Uncharacterized protein | ||||
STRING | Si014944m | 6e-36 | (Setaria italica) | ||||
STRING | Sb07g027280.1 | 9e-36 | (Sorghum bicolor) | ||||
STRING | GRMZM2G033656_P01 | 3e-35 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 2e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14787A |