PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_14684A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 397aa MW: 41953.8 Da PI: 8.6811 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.2 | 3.1e-40 | 69 | 145 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+++ Oropetium_20150105_14684A 69 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLVEFDETKRSCRKRLDGHNRRRRKPRQ 145 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-34 | 61 | 130 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.103 | 66 | 143 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-38 | 67 | 148 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-31 | 69 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence Send to blast |
MPPSAAVRRP PGGPSECELD HGADRRSREP ALGGKAPAAS ASPGLAAGAA NSKRPRPACG 60 AGQQQCPSCA VDGCKADLSK CRDYHRRHKV CEAHSKTPVV VVAGREMRFC QQCSRFHLLV 120 EFDETKRSCR KRLDGHNRRR RKPRQDPMTS ANFITGQQGT RFSPFTTPRP EANWPAIIKT 180 EESPYYSHQI PLGSSSSNRQ HFVGSTSAYT KDGRRFPFLQ EGEISFATGV VLEAAASVCQ 240 PLLLKTVAAP PESSGGGGGG SKMFSDDGLT RVLDSDCALS LLSAPANSSG IDVGRMVRPA 300 EQVPMAAQAL VSGLQFGSAS WFSRPHQAAA ATAAAGAAVS TTTTTTGLEN EQQQQQLNTT 360 VLGSTDNEMN YNGMFHVGGG EGSSDGTSSS LPFSWQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-27 | 69 | 142 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 52 | 56 | KRPRP |
2 | 125 | 142 | KRSCRKRLDGHNRRRRKP |
3 | 137 | 143 | RRRRKPR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_14684A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349189.1 | 1e-161 | teosinte glume architecture 1-like | ||||
Refseq | XP_025819972.1 | 1e-160 | teosinte glume architecture 1-like | ||||
Swissprot | Q6YZE8 | 1e-150 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A3Q8AHR9 | 1e-162 | A0A3Q8AHR9_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | Pavir.J28847.1.p | 1e-161 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-44 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_14684A |