PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14652A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CO-like | ||||||||
Protein Properties | Length: 477aa MW: 50761.7 Da PI: 5.8932 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.4 | 2.2e-06 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++ C+ ++e + l+C+ + lC C + H H ++ Oropetium_20150105_14652A 16 QWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkHVRS 59 689*******9*******************99555666667655 PP | |||||||
2 | CCT | 62.8 | 1.1e-21 | 424 | 467 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++ Oropetium_20150105_14652A 424 RGNAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKST 467 7789**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.0E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.698 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.05E-8 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 6.0E-16 | 424 | 466 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.12 | 424 | 466 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MKGAVGGSGG GGARPQWPCD YCGEAAAALH CRADAARLCV ACDRHVHAAN ALSRKHVRSP 60 LCAGCAARPA TSRVACAGAG EPTFLCADCC DGAEDDGCAG APVEGFSGCP SAAELAASWG 120 LDLRGELGYE SDDVEEEDPF FSALDYSMLA VDPDLRDLYV PCDPLEMAAS SGAPPRRLKG 180 EALRHQLAEM ARRDVDAAQP QTHSDLSPRT PRRSSAASSG RLPEKQAPPS LPPEPVPYTS 240 LLMMASTNCP ELVGGGGDRM ADDDEQLLWD CTAPSVPPAQ IWDFNLGRSR DHNEKGEVGF 300 GPNSGGFMIK SYSDMLKEIS SGTTKELEDI YDSRYGAVAE DIMSTNICQL SSKNVSTGSN 360 KRKVSSCTST AIDGPTTSGN HVPASGPLAL TREISFMDQT VAPAAGGVER PAVKLDSETL 420 AQNRGNAMQR YREKRKNRRY EKHIRYESRK LRADTRKRVK GRFVKSTEAL DVSNGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14652A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974025.1 | 0.0 | zinc finger protein CONSTANS-LIKE 15 | ||||
TrEMBL | A0A3S6JTZ1 | 0.0 | A0A3S6JTZ1_BAMML; COLO | ||||
STRING | Sb07g025940.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4504 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.2 | 9e-35 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14652A |