PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14597A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 115aa MW: 13214.2 Da PI: 10.2114 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.5 | 2.2e-11 | 31 | 88 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l +l+ + l ++ Oropetium_20150105_14597A 31 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 88 899*******************************************999887766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-18 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.5E-10 | 28 | 80 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.829 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.41E-12 | 31 | 85 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-13 | 31 | 84 | No hit | No description |
CDD | cd14703 | 7.55E-18 | 32 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090567 | Biological Process | reproductive shoot system development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MEFTNGEFSE AEKKKIMANE RLAEIALTDP KRVKRILANR QSAARSKERK MRYIQELEHK 60 VQVLQTEATT LSAQLTMLQR DSTGLATQNN ELKIRLQAME QQAQLRDGML ITFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00037 | PBM | Transfer from AT2G21230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14597A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069623 | 1e-111 | BT069623.1 Zea mays full-length cDNA clone ZM_BFb0192H19 mRNA, complete cds. | |||
GenBank | KJ727739 | 1e-111 | KJ727739.1 Zea mays clone pUT5680 bZIP transcription factor (bZIP43) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147562.1 | 3e-66 | uncharacterized protein LOC100281171 | ||||
Refseq | XP_006660351.1 | 9e-67 | PREDICTED: transcription factor RF2a-like | ||||
Swissprot | Q6S4P4 | 8e-44 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A287WLE9 | 3e-67 | A0A287WLE9_HORVV; Uncharacterized protein | ||||
STRING | EMT20520 | 2e-67 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6247 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.3 | 2e-54 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14597A |
Publications ? help Back to Top | |||
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