PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14514A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 476aa    MW: 49643.1 Da    PI: 9.1481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14514AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-051941123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C+k F r  nL+ H r H
  Oropetium_20150105_14514A 19 FVCEVCNKGFQREQNLQLHRRGH 41
                               89*******************88 PP
2zf-C2H213.40.0002395117123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k++  +s+ k H +t+
  Oropetium_20150105_14514A  95 WKCDKCNKRYAVQSDWKAHSKTC 117
                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-61841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-71841No hitNo description
PfamPF121713.0E-51941IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00411941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0941941IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SMARTSM003553006090IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-583116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-790115No hitNo description
SMARTSM0035511095115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
PDAEVIALSP KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPKETRRKVY  60
LCPEPTCVHH DPSRALGDLT GIKKHYCRKH GEKKWKCDKC NKRYAVQSDW KAHSKTCGTR  120
EYRCDCGTLF SRRDSFITHR AFCDALAQES ARVPPIGAGM YGAGGMALGL SGMAASQLQS  180
AFQDHGHSSG AQFEHLMPSS XXXXXXXXXQ PTPSSSSPFY LGGGGEDGQT SLLHGKPAYH  240
GLMQLPEQGS NGMLNLGFFS GATSGQDARL VFPDQFGGGS AAGNGRGDGG EHGNNEQAAM  300
FSGNIMGNQM AGGGAGAGFS SLYGNSSETV APPQMSATAL LQKAAQMGAT TSGGGGGSRN  360
SLLRGLGSGG ALNGRPAGAA GFMAGESSSR SNNSQATENE SQFRDMMNTL AASGGNGAAG  420
AAFGGAFPGV DDGKLSTRDF LGVGGRNNNM NGAAGLQLRH GATGIGMGSL DREMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-3591156368Zinc finger protein JACKDAW
5b3h_F8e-3591156368Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14514A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538220.0BT053822.1 Zea mays full-length cDNA clone ZM_BFb0209O02 mRNA, complete cds.
GenBankBT0539560.0BT053956.1 Zea mays full-length cDNA clone ZM_BFc0072P10 mRNA, complete cds.
GenBankEU9759570.0EU975957.1 Zea mays clone 506559 INDETERMINATE-related protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241804.20.0uncharacterized protein LOC542697
RefseqXP_008648994.10.0uncharacterized protein LOC542697 isoform X5
RefseqXP_008649003.10.0uncharacterized protein LOC542697 isoform X5
RefseqXP_008649012.10.0uncharacterized protein LOC542697 isoform X6
RefseqXP_020396172.10.0uncharacterized protein LOC542697 isoform X5
TrEMBLQ5UDB50.0Q5UDB5_MAIZE; INDETERMINATE-related protein 1
STRINGPavir.Fb02381.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-105indeterminate(ID)-domain 4