PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14451A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18403.8 Da PI: 6.2143 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.7e-38 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++h++FGasn +kll +lp ++r +a+ ++ yeA+ar++dP+yG+v++i++l Oropetium_20150105_14451A 8 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHRVFGASNASKLLMHLPISDRCEAAVTMSYEAQARLQDPIYGCVAHIFSL 91 7*************************89******************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+a+l++lk+e Oropetium_20150105_14451A 92 QQQVVRLQAQLDSLKAE 108 ***********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.658 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-36 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MMTGFGSPCG ACKFLRRKCV KGCVFAPYFC HEQGAAHFAA IHRVFGASNA SKLLMHLPIS 60 DRCEAAVTMS YEAQARLQDP IYGCVAHIFS LQQQVVRLQA QLDSLKAEAT LGYGDGSLTS 120 NPQKENCYEA DLCMPDYNSS NTSWTEQGSG YHDMDDLQSV ALAYLNQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 4 | 122 | 7 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 4 | 122 | 7 | 123 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14451A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN672670 | 1e-111 | JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020402252.1 | 8e-98 | LOB domain-containing protein 29 | ||||
Swissprot | Q5UG13 | 2e-65 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A317Y2S6 | 3e-97 | A0A317Y2S6_MAIZE; LOB domain-containing protein 29 | ||||
STRING | Si015156m | 5e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-58 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14451A |
Publications ? help Back to Top | |||
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