PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14416A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 927aa    MW: 102503 Da    PI: 6.1179
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14416AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14e-24134235199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        +++++  ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +g
  Oropetium_20150105_14416A 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 215
                                99*****************************8544444..49****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Oropetium_20150105_14416A 216 DSVLFI--WNDNNQLLLGIRRA 235
                                ******..7777778**99997 PP
2Auxin_resp121.85.2e-40260343183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaast+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Oropetium_20150105_14416A 260 AAHAASTNSRFTIFYNPRASPSEFVIPLTKYMKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                                79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48118263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-22133234No hitNo description
SMARTSM010194.9E-25134236IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155134236IPR003340B3 DNA binding domain
PfamPF023629.7E-23134235IPR003340B3 DNA binding domain
PfamPF065078.1E-35260343IPR010525Auxin response factor
SuperFamilySSF542773.27E-8769855No hitNo description
PROSITE profilePS5174523.882779863IPR000270PB1 domain
PfamPF023093.9E-5825864IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MKLSPSAAGG LPEQPDSPEA AEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV  60
AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDSFLP  120
ADLGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSQQPP AQELFAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLTKY MKAVYHTRVS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL  360
WDIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGKDDGLT SSLMWLRDSA NPGFQSLNFS  420
GLGSSPWMQP RLDNSLLGLQ PDMYQTIAAA ALQSSAKQVM HFQQPHNTVG RSALLSSNLQ  480
QAQPQFQQLY NQNVNDNTIQ GPSQPEYIQQ QLQHCQSFNE QKSQLHAQQQ QHESHHHQQQ  540
QQQGVQSPQN QQMEQEKHLA TYQSVPNPLQ VFSQFTSGSQ SPASTVPTVS AFSHQQNIAD  600
TNSSSLTPSN LSIMHEMLRP LPSEAASSIH GVPRTTPVPV SDPWSSKRVA VESVIPSQPN  660
VMSPQIEQLD ILPCNIQSSV LAPLPGRECL ADQDRSCDPQ NHLLFGANID SQSLLMQGGI  720
PSLQNDIGSD TIQYSTSNFL SPSQNDYPLN QALTNSACID ESGYVQCSES SEQVNEPLGT  780
YVKVYKSGSF GRLLDITRFS SYDELRSEVG RLFGLDGQLE DPLRSGWQLV FVDREDDVLL  840
VGDDPWQEFV NSVSCIKILS PEEVQQMGKQ GIQLLSSAPA RRLGNGCDSY MSRQESRNLS  900
TGMAPSIFSK QPFGMILEDR LKGKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612736451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14416A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823935.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2S3GLJ50.0A0A2S3GLJ5_9POAL; Auxin response factor
STRINGSb04g004430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]