PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14357A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26783.1 Da PI: 10.2654 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.4e-18 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+ q + Le+ F+ ++ +s++++ eLA+++gL+ rqV vWFqNrRa+ k Oropetium_20150105_14357A 122 RKKLRLTSAQATMLEDTFRAHSILSHAQKHELARRIGLSARQVEVWFQNRRARTK 176 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113 | 2e-36 | 122 | 210 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +kk+rl++ q+++LE++F++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ Oropetium_20150105_14357A 122 RKKLRLTSAQATMLEDTFRAHSILSHAQKHELARRIGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLTDENARLRRDL 205 69********************************************************************************** PP HD-ZIP_I/II 85 eeLre 89 +e+r+ Oropetium_20150105_14357A 206 AEIRA 210 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.54E-18 | 106 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 118 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-14 | 120 | 182 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.19E-13 | 122 | 179 | No hit | No description |
Pfam | PF00046 | 3.6E-16 | 122 | 176 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 122 | 181 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.5E-6 | 149 | 158 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 158 | 174 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.8E-15 | 178 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.7E-7 | 178 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSLTTAGSS MEDEEFFDTR LSLEIGETSR PQRQTTTTTT VRLFGELISP QDRAELRLPT 60 PAGRNKKRAE SGAAIATRGG GRHNKKAKTT SQADQNDDGD HRRSPSDDGD LRIPSVDGGS 120 SRKKLRLTSA QATMLEDTFR AHSILSHAQK HELARRIGLS ARQVEVWFQN RRARTKLKQT 180 EVDCELLRRW CDRLTDENAR LRRDLAEIRA AAGTNKLPAA VSAVCPSCCD KKAMAIVVAG 240 DVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | SRKKLRL |
2 | 170 | 178 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14357A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079890 | 2e-31 | AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence. | |||
GenBank | AF211193 | 2e-31 | AF211193.1 Oryza sativa homeodomain-leucine zipper transcription factor (Hox1) gene, complete cds. | |||
GenBank | AK065404 | 2e-31 | AK065404.1 Oryza sativa Japonica Group cDNA clone:J013006I17, full insert sequence. | |||
GenBank | AP014966 | 2e-31 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 2e-31 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
GenBank | CT832944 | 2e-31 | CT832944.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F07, full insert sequence. | |||
GenBank | CT832945 | 2e-31 | CT832945.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence. | |||
GenBank | X96681 | 2e-31 | X96681.2 Oryza sativa mRNA for DNA-binding protein (Oshox1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951890.1 | 4e-71 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 1e-50 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A3L6RW69 | 8e-70 | A0A3L6RW69_PANMI; Putative homeobox-leucine zipper protein HOX26 | ||||
STRING | Pavir.J13660.1.p | 3e-70 | (Panicum virgatum) | ||||
STRING | Si018305m | 2e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-40 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14357A |