PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14327A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 471aa    MW: 51015 Da    PI: 9.0554
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14327AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41174250278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                CqvegC+adls+akeyhr+h+vCe+hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  Oropetium_20150105_14327A 174 CQVEGCKADLSSAKEYHRKHRVCEAHSKSPKVTIAGLERRFCQQCSRFHALSEFDKKKRSCRRRLNDHNARRRKPQS 250
                                **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-33169235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.308171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38173253IPR004333Transcription factor, SBP-box
PfamPF031101.3E-31174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDWNHKSSIL WDWGNSPPMG ANADDNPKIF PQAEPKFVSF EATGRHQSVH LSRGTLSSSS  60
EMGYCSSKSS IASIDSSPKV GHNMQLNFAP VKAADKNTGN KAGLAKIDDA RSSPSSVVAI  120
SNEDPVIGLK LGKRTYFEDI CGGQCVKSSP SDRSAMTPAA SAKKAKVVQN NSYCQVEGCK  180
ADLSSAKEYH RKHRVCEAHS KSPKVTIAGL ERRFCQQCSR FHALSEFDKK KRSCRRRLND  240
HNARRRKPQS EAISFGASRL SAMFYDARQT ASFLFGQGPY GQLRSYATSS WDNPGGGFKF  300
AETKSPWFKP MGAIGVDRIH LSSQPVWNNI TPNGHHDFDG FNAFKGTRVK VLNQGVEEAS  360
AVVSNHNGAP DLQRALSLLS NTAAEDAASD QAIPQLQPPG LATIVNSSNP VVQGSPAGLW  420
QDVPPLDHEA RLQAFDSLSD GSAIAAPHQL HLLNPPPSYD SPPSHYDQMI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271742471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229246KKRSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14327A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826432.10.0squamosa promoter-binding-like protein 3
RefseqXP_025826439.10.0squamosa promoter-binding-like protein 3
RefseqXP_025826447.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q61e-152SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-152SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A2T7F1R00.0A0A2T7F1R0_9POAL; Uncharacterized protein
STRINGPavir.Aa03225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-42squamosa promoter binding protein-like 2