PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_14260A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

BES1

Protein Properties

Length: 534aa MW: 60021 Da PI: 7.5515

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14260A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	69.8	1e-21	36	81	4	49
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnne 49 g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+ Oropetium_20150105_14260A 36 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMND 81 67899****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.9E-20	36	81	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.3E-112	171	455	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.1E-125	171	455	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.0E-63	194	453	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.2E-31	209	223	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.2E-31	230	248	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.2E-31	252	273	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.2E-31	345	367	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.2E-31	418	437	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
EASLSPPPPV HVHRRPRGFA SATALSAGAT PPRRRGERER EREKERTKLR ERHRRAITSR 60 MLAGLRQHGN FPLPARADMN DGTLYPTPVE APTFTNNLNC YTIGTPLDSQ GSVLQTDDSL 120 SPSSLDSVGL AEQSIKNENY GNSCSVNSLD CIGNDQLMRS SSVLAGDDYT RTPYIPVYAS 180 LRMDIIDSNC QLVDPESVRA ELQHLKSSNV DGVIVDCWWG IVEAWIPRKY EWSGYRNLFG 240 IIKEFKLKVQ VVLSFHGSGK TGSGDVLISL PKWIMEIGQE NQDIFFTDRE GRRNTECLSW 300 GVDKERVLQG RTGIEVYFDF MRSFHMEFRN LSEDGLISAV EIGVGASGEL RYPSCPERMG 360 WRYPGTGEFQ CYDRYLQKNL RQSALSRGHL FWACGPDNAG YYNSRPHETG FFRDGGDYDS 420 YYGRFFLNWY SGVLIDHADQ VLSLAALAFD GVKVVVKRVF YHVLMLRFTL ISSTQRNLGM 480 ILIVITPHSL HTVSNFHSIR SETLTFRSLV VLSSVCTVSI DLLVSLRGIL IVT*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

EASLSPPPPV HVHRRPRGFA SATALSAGAT PPRRRGERER EREKERTKLR ERHRRAITSR  60
MLAGLRQHGN FPLPARADMN DGTLYPTPVE APTFTNNLNC YTIGTPLDSQ GSVLQTDDSL  120
SPSSLDSVGL AEQSIKNENY GNSCSVNSLD CIGNDQLMRS SSVLAGDDYT RTPYIPVYAS  180
LRMDIIDSNC QLVDPESVRA ELQHLKSSNV DGVIVDCWWG IVEAWIPRKY EWSGYRNLFG  240
IIKEFKLKVQ VVLSFHGSGK TGSGDVLISL PKWIMEIGQE NQDIFFTDRE GRRNTECLSW  300
GVDKERVLQG RTGIEVYFDF MRSFHMEFRN LSEDGLISAV EIGVGASGEL RYPSCPERMG  360
WRYPGTGEFQ CYDRYLQKNL RQSALSRGHL FWACGPDNAG YYNSRPHETG FFRDGGDYDS  420
YYGRFFLNWY SGVLIDHADQ VLSLAALAFD GVKVVVKRVF YHVLMLRFTL ISSTQRNLGM  480
ILIVITPHSL HTVSNFHSIR SETLTFRSLV VLSSVCTVSI DLLVSLRGIL IVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	3e-89	174	454	11	290	BETA-AMYLASE
1q6c_A	3e-89	174	454	11	290	beta-amylase
1q6g_A	3e-89	174	454	11	290	beta-amylase
1v3i_A	3e-89	174	454	11	290	Beta-amylase
1wdp_A	3e-89	174	454	11	290	Beta-amylase
1wdq_A	3e-89	174	454	11	290	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14260A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120049	2e-42	AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
GenBank	AP004886	2e-42	AP004886.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0576F08.
GenBank	AP014958	2e-42	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811466.1	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	1e-175	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2T8KTQ0	0.0	A0A2T8KTQ0_9POAL; Beta-amylase
STRING	Si016592m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	1e-160	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14260A

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]