PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14249A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 328aa    MW: 35159.5 Da    PI: 5.6046
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14249AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.79.2e-22224286163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                e+e+k+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
  Oropetium_20150105_14249A 224 EREIKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 286
                                89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.3E-132281IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.2E-23100206No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-16221285No hitNo description
PfamPF001701.6E-20224286IPR004827Basic-leucine zipper domain
SMARTSM003384.4E-21224288IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.242226289IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-11227284No hitNo description
CDDcd147022.68E-24229279No hitNo description
PROSITE patternPS000360231246IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTNTIIWLPV FIFLAFCSQD QPPATTSGTT ASVYPEWPSF QAYSAMAPHG FFSPPVAANS  60
QAHPYMWGAQ GMHPFNHYPV PANGHAEIPH ENEIILMIII SGKSEPGRTS GPSANGITSH  120
SESGSESESD GSDANSQNDS HSKENDEKQG GSSQNGTSYS ASKGMVNQAM SMLPIQPGAI  180
VGVPGSTTNL NIGMDYWAAP GSAAVPAMHS KAPAGSARGD QWDEREIKKQ KRKQSNRESA  240
RRSRLRKQAE CEELGQRAES LRSENSSLRA ELERIRKEYE QLLSQNASLK ERLGATSDSV  300
PETNDQNGGD ASSKKQPDSD AQPGSEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246RRSRLRK
2240247RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14249A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952026.11e-169transcription factor HBP-1a
SwissprotP239221e-123HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLK3YTP11e-168K3YTP1_SETIT; Uncharacterized protein
STRINGSi017637m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.16e-59basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]