PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14064A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 764aa    MW: 82177.6 Da    PI: 5.1115
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14064AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.22e-1194134141
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  Oropetium_20150105_14064A  94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 134
                                688999*********************************86 PP
2START191.15.6e-602805001206
                                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT CS
                      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qW 72 
                                ela +a++elv++a++++p+Wv        +++++e+ + f+ + +      + ea+r+ ++v+m+   lve+l+d ++    +
  Oropetium_20150105_14064A 280 ELAVAAMDELVRMAQLDAPLWVMGTagaqPQLDEEEYARMFPGGIGprqygLRPEASRDNALVIMTRDSLVEILMDANRfasVF 363
                                57899******************999***************88888**999999************************777777 PP

                                -TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                      START  73 detlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                                +  + +a+t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++ +w++vdvS+ds ++ p    + +++++p
  Oropetium_20150105_14064A 364 SSIVSRASTHEVLSTGvagsynGALQVMSMEFQVPSPLVPtRESYFVRYCKHNPDATWAVVDVSLDSLRPSP----ILKCRRRP 443
                                88888*****************************************************************99....7******* PP

                                EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                Sg+li++++ng+skvtwveh+++++r+ h+l+++lv+sgla+gak+wv tl+rqce+
  Oropetium_20150105_14064A 444 SGCLIQEMPNGYSKVTWVEHIEVDDRSMHNLYKPLVSSGLAFGAKRWVGTLDRQCER 500
                                *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-978136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1380136IPR009057Homeodomain-like
SMARTSM003895.0E-492156IPR001356Homeobox domain
PfamPF000464.8E-994134IPR001356Homeobox domain
CDDcd000862.45E-1094136No hitNo description
PROSITE profilePS5084838.276271503IPR002913START domain
SuperFamilySSF559619.99E-31272502No hitNo description
CDDcd088756.06E-116275499No hitNo description
SMARTSM002348.2E-54280500IPR002913START domain
PfamPF018522.7E-49281500IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-4374484IPR023393START-like domain
SuperFamilySSF559618.25E-25522752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MPAMIGRNGM AYGSSSALSL NQVDLLDNQH LQQAFQQQLF DQIPAAGVDS GDNLMHGHAD  60
ALADEFESKS CSENPDGTSG DDGQEDPNQR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD  120
KQRKELSREL GLEPLQNQHE RQENAQLRAE NDKLRSENMR YKEALSTASC PSCGGPAALG  180
EMSFDEHHLR LENARLRDEI DRISGIAAKH VGKPMVSFPL LSSPLAAAAA RSPLDLAGAY  240
GIQQPSLAAD NIFGVGAGAG DLLRSVSTGQ LDADKPMIVE LAVAAMDELV RMAQLDAPLW  300
VMGTAGAQPQ LDEEEYARMF PGGIGPRQYG LRPEASRDNA LVIMTRDSLV EILMDANRFA  360
SVFSSIVSRA STHEVLSTGV AGSYNGALQV MSMEFQVPSP LVPTRESYFV RYCKHNPDAT  420
WAVVDVSLDS LRPSPILKCR RRPSGCLIQE MPNGYSKVTW VEHIEVDDRS MHNLYKPLVS  480
SGLAFGAKRW VGTLDRQCER LASAMASNIP NGDLGVITSI EGRKSMLKLA ERMVASFCGG  540
VTASAAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWIPVP PKRVFDFLRD  600
ETSRSEWDIL SNGGAVQEMA HIANGRDHGN CVSLLRVNST NSNQSNMLIL QESCTDASGS  660
YVVYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPPG GTAAEGESNG SGGSLLTVAF  720
QILVDSVPTA KLSLGSVATV NSLIACTVER IKAAICGEGG NPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14064A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972697.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK3YGB70.0K3YGB7_SETIT; Uncharacterized protein
STRINGSi013285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]