PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14046A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 187aa MW: 20715.7 Da PI: 7.9704 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.4 | 1e-11 | 110 | 142 | 27 | 60 |
E-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 27 CtsagCpvkkkversaedpkvveitYegeHnhek 60 Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+k Oropetium_20150105_14046A 110 CTHPSCPVKRKVETTV-DGQIAEIVYSGEHNHPK 142 ****************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.3E-4 | 105 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.834 | 105 | 143 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-6 | 110 | 141 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-8 | 110 | 143 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-7 | 110 | 143 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MQGREKIAAL KPVASRPFST FRSFSKRLED FTANCSQPIN IREEMNLIRP KAIRLTSLPS 60 DLPTEISATI DAGSSVLEEM EVDTQQVVSP DHLATYNAVR KPLGSLKNCC THPSCPVKRK 120 VETTVDGQIA EIVYSGEHNH PKPRPLRKLL SSTSMEVVVA DLRDNNNVEA EIQIGERNQD 180 PVKRIL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14046A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819931.1 | 3e-63 | probable WRKY transcription factor 3 | ||||
Refseq | XP_025819932.1 | 3e-63 | probable WRKY transcription factor 3 | ||||
TrEMBL | A0A0A9G2V5 | 1e-71 | A0A0A9G2V5_ARUDO; WRKY3 | ||||
STRING | Si014939m | 5e-60 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 4e-14 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14046A |