PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13994A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YC | ||||||||
Protein Properties | Length: 242aa MW: 26482 Da PI: 4.1105 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 140.2 | 5.2e-44 | 83 | 181 | 3 | 98 |
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ++ w++q ie+++dfk +lPlarikki+kad+dvkmi+ eaPv+++kace+filelt+r+w + +krrtl++sd+ aa+ Oropetium_20150105_13994A 83 QALWADQmdeIEQTADFKSPSLPLARIKKIMKADDDVKMIAGEAPVVFAKACEMFILELTMRAWRQIGGTKRRTLQRSDVVAAI 166 778999877789************************************************************************ PP NF-YC 84 trtdifdflvdivpr 98 ++td fdfl+di+p+ Oropetium_20150105_13994A 167 AKTDNFDFLIDIIPE 181 ************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-27 | 76 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-19 | 103 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.3E-34 | 104 | 181 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEQPSPIKEN EGATNGDDYA EYATTAYEPV PLSSVLPSAD GAPSPPASQG APTLPSAPPV 60 SALEQAQQLF KQQELLKQKQ LFQALWADQM DEIEQTADFK SPSLPLARIK KIMKADDDVK 120 MIAGEAPVVF AKACEMFILE LTMRAWRQIG GTKRRTLQRS DVVAAIAKTD NFDFLIDIIP 180 EILNGDCVVG MPPTTTLSTM MPSYIPGMTD PFGMYANQQP VLYAWPDPQQ EQQTSDGERD 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-43 | 89 | 180 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | RRTLQRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13994A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8LCG7 | 4e-47 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15703 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-47 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13994A |
Publications ? help Back to Top | |||
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