PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13933A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 303aa    MW: 31108.2 Da    PI: 10.8345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13933AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30238296259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D+y+WrKYGqK++kgs+fpr+YYrC++  gCp++k+ver+a dp ++ +tYeg+H+h+
  Oropetium_20150105_13933A 238 ADEYSWRKYGQKPIKGSPFPRGYYRCSTVkGCPARKHVERDAADPGTLLVTYEGDHRHD 296
                                69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-31229297IPR003657WRKY domain
PROSITE profilePS5081131.295232298IPR003657WRKY domain
SuperFamilySSF1182902.22E-25234296IPR003657WRKY domain
SMARTSM007741.7E-35237297IPR003657WRKY domain
PfamPF031063.8E-25239295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAVDLLGHAA FAAGEQLAFQ EAAAAGLRSL ELLASSLSPR AERPPQLGQI ADQAVSRFRR  60
VINLLDRTGH ARFRRAPAAV VAADLDSSPP ASPRRPAPTA PAPAPAVVSQ SQPTLLTLDF  120
TKPEAKPAPA VSAATSTSFL SSVTAGGGGG EGSVSKGQSL AAAVSSGKPP LPKRKQHPCS  180
APTNPAAHPA CHCSMKKRRK HPRGATRTVR VPAPAQSGSG SAPPSARASA SAAADVPADE  240
YSWRKYGQKP IKGSPFPRGY YRCSTVKGCP ARKHVERDAA DPGTLLVTYE GDHRHDAAAG  300
AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-21225296575Probable WRKY transcription factor 4
2lex_A5e-21225296575Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13933A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9720241e-66EU972024.1 Zea mays clone 373577 WRKY25 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822145.11e-91WRKY transcription factor WRKY51-like
TrEMBLA0A1E5VBK61e-101A0A1E5VBK6_9POAL; Putative WRKY transcription factor 11
STRINGSi014163m8e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.29e-33WRKY DNA-binding protein 11