PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13925A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 9863.55 Da PI: 11.0089 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 16 | 60 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i+nk rqvtfskRr ++KKA+ELS+ vav++fs+ gk + Oropetium_20150105_13925A 16 KPISNKEARQVTFSKRRPSLFKKASELSTY---VVAVVVFSPGGKSFS 60 78**************************95...6********999665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-20 | 8 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.507 | 8 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-21 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-10 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-18 | 18 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-10 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MVKVKMTKGR KTIEIKPISN KEARQVTFSK RRPSLFKKAS ELSTYVVAVV VFSPGGKSFS 60 FGHPSVYSIV DHFLATTGGH AMGANRPCYA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13925A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445267.2 | 3e-28 | agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_002488981.1 | 2e-28 | agamous-like MADS-box protein AGL61, partial | ||||
Swissprot | Q9FKK2 | 2e-20 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3S6K9H7 | 2e-28 | A0A3S6K9H7_BAMOL; MADS70 | ||||
STRING | Sb07g007306.1 | 1e-27 | (Sorghum bicolor) | ||||
STRING | Sb07g007373.1 | 1e-27 | (Sorghum bicolor) | ||||
STRING | Sb0836s002010.1 | 6e-28 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-22 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13925A |
Publications ? help Back to Top | |||
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