PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13861A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARR-B
Protein Properties Length: 768aa    MW: 83721.2 Da    PI: 6.3327
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13861AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.85.6e-24228281155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+r++W+ +LH+rFv+av+q+ G  +A+Pk+i +lm+v+gL+++++ SHLQkY++
  Oropetium_20150105_13861A 228 KQRIQWSGQLHNRFVQAVNQI-GLANAVPKKIHKLMNVEGLSMTNISSHLQKYKI 281
                                79*******************.9******************************86 PP
2Response_reg36.32.9e-131491175
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS
               Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpii 75
                               vl +dD+++ ++++ ++l+  +y +v+ + + e alell++++     +Dl+++ + mpgmdG++ll+ i  e  ++p++
  Oropetium_20150105_13861A 14 VLAIDDDRTCLNIIVTMLQICKY-DVTPVLETEVALELLRARKggddqFDLVITNVCMPGMDGFKLLEIISLEM-DVPVV 91
                               7899*******************.99999999*******999889999********************997654.67776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.22E-141091IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-271191No hitNo description
SMARTSM004481.4E-1512168IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.23313172IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-91491IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.78E-1215165No hitNo description
Gene3DG3DSA:3.40.50.23001.6E-27133200No hitNo description
SuperFamilySSF521723.7E-5138176IPR011006CheY-like superfamily
SuperFamilySSF466896.81E-17225285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-24226285IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-20228280IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MDVQNKKFPE GLRVLAIDDD RTCLNIIVTM LQICKYDVTP VLETEVALEL LRARKGGDDQ  60
FDLVITNVCM PGMDGFKLLE IISLEMDVPV VSKALPDPLT VSAHVYSSIL LMLLQILPSG  120
LLLNLELSLC HPVLLVNEDL QTIIRGIKHG ASDYLVKPIR LEQVKNLWMH VVRKGMNSGN  180
CNSTRQRLHP GNADGEKECA KQNRKYEKKE HDEQSTQVYN AITATRKKQR IQWSGQLHNR  240
FVQAVNQIGL ANAVPKKIHK LMNVEGLSMT NISSHLQKYK IYLEKLNLGT VKPSSPFAVE  300
PGWNKWNTTF NLNNGSENEA RRPELGTYRD PKAFLGLPAF PGSTNSSNPV ANTMSSTPSF  360
GTYQGTPTFP GSTNSSNPVA NMMSSSTSPF GTPMQSLQLM SAKRNLVIAP NDVWPVGKGG  420
SLLKDATAPV PKHDASKFII FGASHMNLMS GGSKMFHSGP SGSSIFPYSS DSIGFNTSKS  480
SLSGSCSGVV FGNISKGSSS SQDRSNGISS YASILCEKLL EANRGIPVNA DESFEKIADC  540
DIAPNKILLP SQSPELGNQH SAQVLPCSAD PINKISTEPP RFVARARLNI NTNTRKTVAP  600
PMFDDLGHKI GAFEFEGPSQ ENDDLTVDQY LELLKSTVQM LDLGNEFQDQ MDMDTVVSEE  660
VTPMEGANYQ MAPVNLGSNR NSIVMLVDNH APGSASNIIH TLPNGQGASR NLLANDSTVG  720
LQAITHDQNI DKPLMAAGEA HVMSVDFPLD DFLNDFNAVV LCMREEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16228284157Transcription factor LUX
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13861A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-60response regulator 12