PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13811A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 632aa    MW: 68068.7 Da    PI: 6.1455
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13811AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.2e-29270326259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 Dg+nWrKYGqK+vk+s+++rsYYrCt +gC +kkkve+++ d++v+ei+Y+g Hnhe
  Oropetium_20150105_13811A 270 ADGFNWRKYGQKQVKSSDNSRSYYRCTNSGCFAKKKVEHCH-DGRVMEIIYRGAHNHE 326
                                7****************************************.***************8 PP
2WRKY98.73.6e-31441498259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d k +++tYeg+Hnh+
  Oropetium_20150105_13811A 441 SDGYRWRKYGQKIVKGNPNPRSYYRCTYGGCPVRKHVEKAPDDDKNMVVTYEGKHNHD 498
                                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-26259328IPR003657WRKY domain
PROSITE profilePS5081122.332264328IPR003657WRKY domain
SuperFamilySSF1182901.11E-22265328IPR003657WRKY domain
SMARTSM007741.6E-31269327IPR003657WRKY domain
PfamPF031063.8E-22271326IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-31433500IPR003657WRKY domain
SuperFamilySSF1182902.48E-27434500IPR003657WRKY domain
PROSITE profilePS5081133.534435500IPR003657WRKY domain
SMARTSM007741.9E-35440499IPR003657WRKY domain
PfamPF031061.7E-25442498IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MSVNSSPSSH PPQLTSRTSS GLPNPSFPHL PSSMASGDPE PEPAEENRTS PEAAVAAEEE  60
TRPPAAEAPR SPAEEKRPAS EAAKADTHPP PEAPGPPPSF SAYLEKKVET EAKQGGKEGE  120
TDDKVKDKKK AKVEPKVVEV AEVKVEGIEK GIGATRRPAG ASPETPILAV PMVAVPCFIA  180
PPGFPGQFVM SHQAALASVT AQAQMQLQSP TSSSYSEAPS SPFYITPKAL VPLQQAPSII  240
SERTISTPTA DKLSSPDSKS HHHTVVNMVA DGFNWRKYGQ KQVKSSDNSR SYYRCTNSGC  300
FAKKKVEHCH DGRVMEIIYR GAHNHEPPQK TRFAKERVPP IRVPSGDETL RLVNTEIVDS  360
QTPTYKLDQS TVTETSENAS EPQLFCSSDC EGDVGDKSED EHPSAEPLLK RRAVEFSTPN  420
FTPVLRTVRE QKIIVQAGMV SDGYRWRKYG QKIVKGNPNP RSYYRCTYGG CPVRKHVEKA  480
PDDDKNMVVT YEGKHNHDEP FRNSGELRDV PVSVVSPTTE QLNTSASTTS VITPVATTTE  540
QPNTSTSTLV ISPSATTADK PSASTSASDE KPPTSAQKDA IVEPVKDTTS EPGGDNALES  600
AQALLKMRTN SDEMNNSVLT ETSAVVPVQN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-264395001677Probable WRKY transcription factor 4
2lex_A4e-264395001677Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13811A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.10.0probable WRKY transcription factor 32
TrEMBLK3YGX00.0K3YGX0_SETIT; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.16e-64WRKY DNA-binding protein 4