PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13809A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 293aa    MW: 32939.2 Da    PI: 7.3067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13809AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162270148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT++Ed  lvd++++ Gg  +W++ ++  g++R++k+c++rw++yl
  Oropetium_20150105_13809A 22 KGPWTPDEDRVLVDYITRNGGYgNWRRLPKLAGLNRCGKSCRLRWNNYL 70
                               79******************779*************************7 PP
2Myb_DNA-binding56.94.8e-1876121148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                r ++TteEd l+++++  lG++ W+tI++ ++ gRt++++k++w+++l
  Oropetium_20150105_13809A  76 RSNFTTEEDNLIIHLHSILGNR-WATISKALP-GRTDNNIKNHWNSHL 121
                                789*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8931770IPR017930Myb domain
SuperFamilySSF466897.11E-2921117IPR009057Homeodomain-like
SMARTSM007173.7E-112172IPR001005SANT/Myb domain
PfamPF002491.5E-132270IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-232377IPR009057Homeodomain-like
CDDcd001678.15E-92470No hitNo description
PROSITE profilePS5129426.88471125IPR017930Myb domain
SMARTSM007174.6E-1575123IPR001005SANT/Myb domain
PfamPF002491.7E-1576121IPR001005SANT/Myb domain
CDDcd001673.53E-1278121No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2478125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRRPPSQFRG DHKTEDVELL KKGPWTPDED RVLVDYITRN GGYGNWRRLP KLAGLNRCGK  60
SCRLRWNNYL RPDINRSNFT TEEDNLIIHL HSILGNRWAT ISKALPGRTD NNIKNHWNSH  120
LSKQLLAMGI DPRTHMSIPD SLHPDFLKLQ ADAVNFFVKL KNRSTITPGH PICPNATNLT  180
APLYEEVSLQ PTYGAAGNQS DTMAVPQQTT TMANQHKQIF ESSYAAMPAL WNIGMTDTRQ  240
QASILVPNAL CQINGIDEVI TASPTLNQLD PFNYHGVAEL DNDDECLKSM LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29201255108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13809A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811879.12e-59transcription factor MYB93-like
TrEMBLA0A2S3HME54e-58A0A2S3HME5_9POAL; Uncharacterized protein
TrEMBLA0A2T7E3W64e-58A0A2T7E3W6_9POAL; Uncharacterized protein
STRINGPavir.J23197.1.p1e-58(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-59myb domain protein 17