PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13559A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 555aa    MW: 62365.8 Da    PI: 6.0204
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13559AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.31e-1191785292356
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA a+s++  e+ ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s e l+++k+++
  Oropetium_20150105_13559A 178 KQLLTKCAGALSEDRIEEFHKLVQEARGVVSITGEPIQRLGAYLLEGLVARHGNSGTSIYRALKCREPE---SNELLSYMKILY 258
                                689*****************************************************************9...99********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                +++P++kf++++aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L++
  Oropetium_20150105_13559A 259 NICPYFKFGYMAANGAIAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDIVGKMLKS 342
                                *****************************************************************999999************* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                + ee+++p+ef++l     ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n++
  Oropetium_20150105_13559A 343 MSEEFKIPLEFTPL-PVYATQVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTT 425
                                *************6.77788999************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                +F+ rf+e+++yysa+f+s++a+lpr+++eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++
  Oropetium_20150105_13559A 426 PFMMRFTETMDYYSAMFESIDANLPRDNKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLMMAGFKPYPLSSYVNS 509
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesg 356
                                 +k ll+ ++ d y++ee++g
  Oropetium_20150105_13559A 510 VIKKLLACYS-DKYTLEEKDG 529
                                *******999.55*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.189151528IPR005202Transcription factor GRAS
PfamPF035143.6E-117178529IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGIFVLFWGV NSLKSEFSNS PYTPLSSQLE CDNLSALSNT PDNQSSTETI SAQPISPLEA  60
DSSYRQAGII LRENIQVRPD PLYATSRHNM QHALREIETV LMAPDADDAA TGTKQEIEEN  120
KPAQLMRQRS RTCSHESRQP SPGVVWSQFA TGYPSSSYEF RPEKRQRELR EEPQNIVKQL  180
LTKCAGALSE DRIEEFHKLV QEARGVVSIT GEPIQRLGAY LLEGLVARHG NSGTSIYRAL  240
KCREPESNEL LSYMKILYNI CPYFKFGYMA ANGAIAEALR NEDRIHIIDF QIAQGTQWIT  300
LIQALAARPG GPPHVRITGI DDPVSEYARG EGLDIVGKML KSMSEEFKIP LEFTPLPVYA  360
TQVTKEMLEI RPGEALAVNF TLQLHHTPDE SVDVNNPRDG LLRMVKGLSP KVTTLVEQES  420
HTNTTPFMMR FTETMDYYSA MFESIDANLP RDNKERINVE QHCLAKDIVN IIACEGKDRV  480
ERHELLGKWK SRLMMAGFKP YPLSSYVNSV IKKLLACYSD KYTLEEKDGI EIDRHLPAAS  540
SHGKIEPNLP NPNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-631615293361Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13559A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800435.10.0chitin-inducible gibberellin-responsive protein 1 isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2S3H3090.0A0A2S3H309_9POAL; Uncharacterized protein
TrEMBLA0A3L6TDG80.0A0A3L6TDG8_PANMI; Chitin-inducible gibberellin-responsive protein 1
STRINGOPUNC07G16570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]