PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13392A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 34423.8 Da PI: 6.0681 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G +W++++++ g+ R++k+c++rw +yl Oropetium_20150105_13392A 13 RGLWSPEEDEKLVRYITAHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.1 | 7.4e-12 | 66 | 102 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt+++ Oropetium_20150105_13392A 66 RGTFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNE 102 899*******************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-27 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.237 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.5E-26 | 10 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.40E-12 | 16 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 64 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.511 | 65 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-5 | 65 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-10 | 66 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.62E-8 | 68 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVRYITA HGHSCWSSVP KHAGLQRCGK SCRLRWINYL 60 RPDLKRGTFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEFHSNGAIA NGGGAATTPP 120 FTISSPTKAA FDALTVGPPP SEMMTPGLFD VPNPGVLMRQ DQATIPGGYP YQDNGHGVLM 180 SFRDQNAGLQ ASMDFMNGSS SSSSMDHAVG MQNGFSQGMP AAAFMDETAA MWAVEPGMGA 240 GMEVVQQPPP PPPVVVHPTA VMNGSGGAVT DKGLDMMDVS SVYSSVGANN AAFDLELMES 300 CDLFCSGGGG AGNAMEHLQW DC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 13 | 101 | 4 | 91 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 13 | 101 | 4 | 91 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 13 | 101 | 4 | 91 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13392A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004006 | 3e-55 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. | |||
GenBank | AP004259 | 3e-55 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 3e-55 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 3e-55 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957753.1 | 1e-149 | transcription factor MYB61 | ||||
TrEMBL | K3ZU71 | 1e-147 | K3ZU71_SETIT; Uncharacterized protein | ||||
STRING | Si030152m | 1e-148 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 4e-63 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13392A |