PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13384A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 766aa    MW: 83532.1 Da    PI: 6.3579
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13384AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-201772156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k
  Oropetium_20150105_13384A 17 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 72
                               688899***********************************************998 PP
2START130.71.7e-412294933205
                                HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                      START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWd 73 
                                a +a++el+++a+a++ +Wvk     e +n  ++ + f++ ++            +e +r+sg+v+m ++ lv  ++d++ +W 
  Oropetium_20150105_13384A 229 AARALDELIRLAQAGDHVWVKQGderETLNVAIYDSLFSRPGAaaaagfrppdIGVEGSRDSGLVFMSSVALVDVFMDTN-KWM 311
                                57899****************9976655555555555555444889999999999*************************.*** PP

                                TT-S....EEEEEEEECTT................................................EEEEEEEEXXTTXX-SS CS
                      START  74 etla....kaetlevissg................................................galqlmvaelqalsplv 105
                                e ++    ka t++v+ +g                                                ga+++m+ el  ++p+v
  Oropetium_20150105_13384A 312 EFFPgivsKAHTIDVLVNGlggrneslimvvihrnssyyyhyyyyiiitdsnllcpldrmelmtmwrGAYVQMYEELHIMTPVV 395
                                ************************************************************************************ PP

                                X.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHH CS
                      START 106 p.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvks 187
                                p R+  f+Ry++q ++g w++ dvSv++ q+        R+++lpSg+li ++sng+skvtwvehv+ +  lp +  +r lv s
  Oropetium_20150105_13384A 396 PtRELSFLRYCKQIEQGLWAVIDVSVEPGQHYG----ASRSRRLPSGCLIADMSNGYSKVTWVEHVEIEQTLPiSLPFRNLVLS 475
                                *******************************75....689999******************************9999******* PP

                                HHHHHHHHHHHHTXXXXX CS
                      START 188 glaegaktwvatlqrqce 205
                                g+a+ga +wva+lqr c 
  Oropetium_20150105_13384A 476 GAAFGAHRWVAALQRACD 493
                                ***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.09E-201077IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-221179IPR009057Homeodomain-like
PROSITE profilePS5007117.8641474IPR001356Homeobox domain
SMARTSM003899.6E-201578IPR001356Homeobox domain
CDDcd000862.57E-191675No hitNo description
PfamPF000464.2E-181772IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084841.78218497IPR002913START domain
SuperFamilySSF559611.54E-27220332No hitNo description
CDDcd088757.15E-90222492No hitNo description
SMARTSM002343.3E-21227494IPR002913START domain
PfamPF018528.0E-34229493IPR002913START domain
SuperFamilySSF559611.54E-27382496No hitNo description
SuperFamilySSF559616.87E-19514753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MDFGDEQECG SDNQRRRKRY HRHTPRQIQQ LEAMFKECPH PDENQRAALS RELGLEPRQI  60
KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENITMREA LKNVICPNCG GPPVAEDFFD  120
EQKLRMENAR LKEELDRVSS ITSKYLGRPF TQMPPMPMSM GVASLDLSVG GGMAGGAPSL  180
DLDLLGGCSA SVGGMCTSAG MPFHMPPPHA MATTTTTSEL ERPMMIDAAA RALDELIRLA  240
QAGDHVWVKQ GDERETLNVA IYDSLFSRPG AAAAAGFRPP DIGVEGSRDS GLVFMSSVAL  300
VDVFMDTNKW MEFFPGIVSK AHTIDVLVNG LGGRNESLIM VVIHRNSSYY YHYYYYIIIT  360
DSNLLCPLDR MELMTMWRGA YVQMYEELHI MTPVVPTREL SFLRYCKQIE QGLWAVIDVS  420
VEPGQHYGAS RSRRLPSGCL IADMSNGYSK VTWVEHVEIE QTLPISLPFR NLVLSGAAFG  480
AHRWVAALQR ACDRFASLAS LGLPHHHDPS GVTSEGKRGL MKLAQRMVSG FCAGLTSSPT  540
QRWTLMAGNT DVSVRVSTHH DGADPGQQAS NNNGVVLGAV TSIWLPVPCD HAFALVRDVN  600
TRAQWDLLLH ENQVQEVSRI THGADPGNCI SLLRGLSSSQ NSMLILQESC TDASGSLVVY  660
SPIDIPSANV VMSGEDPSGI PLLPSGFAIL PDPDAGAPSS SSSASGGLPP TPPRCIVTVA  720
YQLLVSSLPT SKLNSESVAT VNTLISNTVQ QIRAALNCAG GSGPS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13384A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668130.0BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLC5Z6D60.0C5Z6D6_SORBI; Uncharacterized protein
STRINGSb10g006820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11