PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13099A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 398aa MW: 43582.5 Da PI: 8.5076

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13099A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	304	349	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYI++Lq Oropetium_20150105_13099A 304 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDIAVEYIRELQ 349 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.303	298	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-13	301	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-11	302	349	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-12	303	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	304	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-11	304	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MNRLTPSSHG AMPXXXXXXX XXXXXXXXXX XXXXXXXXVT REHALPPPPP PPVSVSRFFS 60 GESSGLTSCE SSGRTDGGAG RPAPLERAYG GSGEIRVPPP PPHVAAQTMD GHGSSTLLRH 120 SSSPAGLLSR LMADTHGMAA TTGMGSYSHA GTDAMSSHGH NRRLSSQWSF SRQDLPQISE 180 MGMIPDIGES IIAGGGGGGX XXXXXXXXXX XXXQQASSYL SRNFSVSSWE DTNSILFSSP 240 GKKAKATDAA DDMVNSFSNI DSQFGLSKTS SLDLSGMDDF LQLQQDSVAC RVRAKRGCAT 300 HPRSIAERER RTRISKRLKK LQDLVPNMDK QTNTSEMLDI AVEYIRELQG XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX XXXXXQFIFR RMEHVWV*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MNRLTPSSHG AMPXXXXXXX XXXXXXXXXX XXXXXXXXVT REHALPPPPP PPVSVSRFFS  60
GESSGLTSCE SSGRTDGGAG RPAPLERAYG GSGEIRVPPP PPHVAAQTMD GHGSSTLLRH  120
SSSPAGLLSR LMADTHGMAA TTGMGSYSHA GTDAMSSHGH NRRLSSQWSF SRQDLPQISE  180
MGMIPDIGES IIAGGGGGGX XXXXXXXXXX XXXQQASSYL SRNFSVSSWE DTNSILFSSP  240
GKKAKATDAA DDMVNSFSNI DSQFGLSKTS SLDLSGMDDF LQLQQDSVAC RVRAKRGCAT  300
HPRSIAERER RTRISKRLKK LQDLVPNMDK QTNTSEMLDI AVEYIRELQG XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXQFIFR RMEHVWV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13099A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-151	transcription factor bHLH128-like
TrEMBL	A0A2S3HP78	1e-150	A0A2S3HP78_9POAL; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-147	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13099A