PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13096A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | ERF | ||||||||
Protein Properties | Length: 468aa MW: 49294.5 Da PI: 6.8936 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.4 | 4.7e-15 | 177 | 228 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Oropetium_20150105_13096A 177 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 228 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.203 | 82 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-4 | 100 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-6 | 114 | 144 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-6 | 115 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-18 | 177 | 238 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.95E-23 | 177 | 238 | No hit | No description |
Pfam | PF00847 | 5.8E-10 | 177 | 228 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 178 | 242 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-18 | 178 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 178 | 236 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MRGSELSALV AEPKLEDFLG GISFSEQNHK ANCAMIPSSS GTCYASSGGG TLGARTKEDS 60 SGSGGAGAMV AVSTDTGGSG ASAEAVARKT VDTFGQRTSI YRIDGREDMR LIWGYDKEDK 120 AARAYDLAAL KYWGPTTTTN FPVNNYEKEL EEMKHMTRQE FVASLRRKSS GFSRGASIYR 180 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY 240 DVKSILESSA LPIGSAAKRL KEAEHQAASA AIVGYDAGRI ASQLGDSAAL AAAYGGAHYH 300 HAAAWPTIAF QPAHAGVAAG LYHPYAQPLR GGWCKQEQDH SVIAAAHSLQ ELHHLNLGGG 360 AVVGAHDFFS PAAAMHGGLG SIDNNAASLE HSTGSNSVVY NGVGGGESNG GSGYMMPAVN 420 TAAVSATTTA MVSHEQVHQA RPQGHEDAKQ AQMAYENFLV NAEAYGSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13096A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682077.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A368REM7 | 0.0 | A0A368REM7_SETIT; Uncharacterized protein | ||||
STRING | Sb03g042810.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 7e-95 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13096A |