PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13032A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 44993.9 Da PI: 8.287 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.3e-50 | 39 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWka Oropetium_20150105_13032A 39 MPGFRFHPTEEELIEFYLRRKVEGKRFNA-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGHRPNRVTASGYWKA 121 79**************************9.89***************888889******************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl Oropetium_20150105_13032A 122 TGADRMIRAESNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 164 *****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-55 | 38 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.372 | 38 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 40 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MSSGKHENGH GAAVAAAAAA AAAGEGEQGG DTHEDDLVMP GFRFHPTEEE LIEFYLRRKV 60 EGKRFNAELI TFLDLYRYDP WELPAMAAIG EKEWFFYVPR DRKYRNGHRP NRVTASGYWK 120 ATGADRMIRA ESNRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPHEETD RYHKTEISLC 180 RVYKRSGIDD GHDGRPFSAR SRGATTAQQQ DSKQAASSSS TPTPPTTPSS NNKLHLLHGE 240 CTSAPPPVAE NAAAANTAHK ASLTLQQHLT NNLSSSGPAD QQAAAGGHHR RHEGTAEGVY 300 DHPRNTKAAF AASTYSLLSL VNAASMGGSS VSAAAIDELS TLVVGQHVHG PPPAYFNHHN 360 QAATGHSHFL PLQTTPPALQ PTLPMSVAAI SDKIWEWNTI PDAAARDYSS AAGFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 40 | 185 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 40 | 185 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13032A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039864 | 0.0 | BT039864.1 Zea mays full-length cDNA clone ZM_BFc0047I12 mRNA, complete cds. | |||
GenBank | EU957131 | 0.0 | EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456762.1 | 1e-166 | NAC domain-containing protein 35 | ||||
TrEMBL | C5XEP7 | 1e-165 | C5XEP7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g042210.1 | 1e-165 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-103 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13032A |