PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13032A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 416aa    MW: 44993.9 Da    PI: 8.287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13032AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.3e-50391642128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWka
  Oropetium_20150105_13032A  39 MPGFRFHPTEEELIEFYLRRKVEGKRFNA-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGHRPNRVTASGYWKA 121
                                79**************************9.89***************888889******************************* PP

                        NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                tg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl
  Oropetium_20150105_13032A 122 TGADRMIRAESNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 164
                                *****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-5538185IPR003441NAC domain
PROSITE profilePS5100555.37238185IPR003441NAC domain
PfamPF023651.5E-2440164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSSGKHENGH GAAVAAAAAA AAAGEGEQGG DTHEDDLVMP GFRFHPTEEE LIEFYLRRKV  60
EGKRFNAELI TFLDLYRYDP WELPAMAAIG EKEWFFYVPR DRKYRNGHRP NRVTASGYWK  120
ATGADRMIRA ESNRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPHEETD RYHKTEISLC  180
RVYKRSGIDD GHDGRPFSAR SRGATTAQQQ DSKQAASSSS TPTPPTTPSS NNKLHLLHGE  240
CTSAPPPVAE NAAAANTAHK ASLTLQQHLT NNLSSSGPAD QQAAAGGHHR RHEGTAEGVY  300
DHPRNTKAAF AASTYSLLSL VNAASMGGSS VSAAAIDELS TLVVGQHVHG PPPAYFNHHN  360
QAATGHSHFL PLQTTPPALQ PTLPMSVAAI SDKIWEWNTI PDAAARDYSS AAGFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-544018519165NO APICAL MERISTEM PROTEIN
1ut4_B2e-544018519165NO APICAL MERISTEM PROTEIN
1ut7_A2e-544018519165NO APICAL MERISTEM PROTEIN
1ut7_B2e-544018519165NO APICAL MERISTEM PROTEIN
4dul_A2e-544018519165NAC domain-containing protein 19
4dul_B2e-544018519165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13032A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398640.0BT039864.1 Zea mays full-length cDNA clone ZM_BFc0047I12 mRNA, complete cds.
GenBankEU9571310.0EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456762.11e-166NAC domain-containing protein 35
TrEMBLC5XEP71e-165C5XEP7_SORBI; Uncharacterized protein
STRINGSb03g042210.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-103NAC domain containing protein 35