PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13001A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24419.4 Da PI: 7.2561 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.8 | 5e-22 | 9 | 43 | 1 | 35 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 krien++nrqvtfskRrng+lKKA E+SvLCdaev Oropetium_20150105_13001A 9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEV 43 79********************************9 PP | |||||||
2 | K-box | 68.6 | 2.1e-23 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 yq++sgk l+++k++ l+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k +e++ + + + + e Oropetium_20150105_13001A 71 YQTNSGKILWDEKHKILSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLMEHWERCMTHHKILE 154 89999999************************************************************************9999 PP K-box 85 kelqeenkaLrkk 97 +e++ + +++ Oropetium_20150105_13001A 155 DENKLLAFKVHQQ 167 9999888777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.754 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-25 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-18 | 10 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-14 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.304 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVXXXXXXX XXXXXXXCSP 60 KTSLSRILEK YQTNSGKILW DEKHKILSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GLTNLNEKLM EHWERCMTHH KILEDENKLL AFKVHQQDIA LSGSMRELEL 180 GYHGDRDFEA QMPITFRVQP SHPNLQENN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13001A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ292959 | 0.0 | AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene). | |||
GenBank | BT064849 | 0.0 | BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970811.1 | 1e-128 | MADS-box transcription factor 2 | ||||
Swissprot | Q40702 | 1e-127 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | K3XM06 | 1e-127 | K3XM06_SETIT; Uncharacterized protein | ||||
STRING | Si002929m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 9e-63 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13001A |
Publications ? help Back to Top | |||
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