PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12993A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 572aa    MW: 63274.4 Da    PI: 4.7558
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12993AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.71.9e-1302025712374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA a+s+ +  +aq+++++l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++
  Oropetium_20150105_12993A 202 KQLLFDCAMALSEYNVDEAQTIITELRQMVSIQGDPSERIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILF 282
                                589*****************************************************************9...89999******* PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                e++P++++++++aN aIlea +ge+ vHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL++
  Oropetium_20150105_12993A 283 EICPCFRLGFMAANYAILEACKGEDIVHIIDFDINQGSQYITLIQVLKNNANKPRHLRITGVDDPETVqrPIGGLRVIGQRLEQ 366
                                ******************************************************************99878899********** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +A+ +gv+fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n++
  Oropetium_20150105_12993A 367 LAKDCGVSFEFRA-VGANIGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTA 449
                                *************.799******************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                +Fl+rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGFkp p+++++ +
  Oropetium_20150105_12993A 450 PFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMMMAGFKPCPFNSNVIS 533
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +k+ll+ + ++ y+ ee++g l +gW +++L++ SaW+
  Oropetium_20150105_12993A 534 GIKSLLKSYCDR-YKFEENHGGLHFGWGEKSLIVSSAWQ 571
                                **********66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.533175552IPR005202Transcription factor GRAS
PfamPF035146.5E-128202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSFVRRVDPS TAYTDNLYVH KFSAPSSNFG SRRFAPDTQL FCYGPEPYNA EYGNMGFTSA  60
PSAEFQNSLC SQQASLTPYH ITADGRSTTA ADTQSNSCSD AAKDSPVLSN VSQQNSQSIS  120
GSQSSGLEAE IDEDEMRLKL QELEHALLGD SDDILFEICR TGSINDEWAD PMKNVLIPNS  180
PKDSESSVSC AVSNNGAPRT PKQLLFDCAM ALSEYNVDEA QTIITELRQM VSIQGDPSER  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL  300
EACKGEDIVH IIDFDINQGS QYITLIQVLK NNANKPRHLR ITGVDDPETV QRPIGGLRVI  360
GQRLEQLAKD CGVSFEFRAV GANIGDVTPA MLDCRPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYSALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMMMA GFKPCPFNSN VISGIKSLLK  540
SYCDRYKFEE NHGGLHFGWG EKSLIVSSAW Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6420857025377Protein SCARECROW
5b3h_D2e-6420857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12993A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5347040.0EF534704.1 Aeluropus littoralis scarecrow gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA5HJS40.0A5HJS4_9POAL; Scarecrow
STRINGSi000832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]