PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12929A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 518aa    MW: 56703.5 Da    PI: 5.8933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12929AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06277298223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 C +Cgk F+r  nL+ H+r H
  Oropetium_20150105_12929A 277 FCLICGKGFKRDANLRMHMRGH 298
                                5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-5274301No hitNo description
SMARTSM003550.012276298IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552276303IPR007087Zinc finger, C2H2
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-5278302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035586325358IPR015880Zinc finger, C2H2-like
SMARTSM0035522363385IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEGEMIRSLE TAMKASSSMA SGTDNPDQQI APSNSVEQFY LSRPNQSFPG LPPFFGSPSS  60
SLYLPNENEP KVGNQFEQNP SVNNLIDWDP QAIVSNLSFL EQKIKQVKDI VQSMSSRENQ  120
TAGGSCELAA KQQLITADLT SIIIQLISTA GSLLPSMKNP LSSNPAVRQL SNPLGSPMGF  180
GMNANQRLST NNKTMPDVNK ASDYDELINS LNTNQDEKDE LIKCPHPCGG EGSEPTPMED  240
HDVKESDDGG EGENLPPGSY VVLQLEKEEI LAPHTHFCLI CGKGFKRDAN LRMHMRGHGD  300
EYKTPAALAK PSKDSGSDHA PVTRYSCPFM GCKRNKEHKK FQPLKTILCV KNHYKRSHCD  360
KSYTCSRCNT KKFSVIADLK THEKHCGRDK WLCSCGTTFS RKDKLFGHVA LFQGHTPALP  420
MDDVKVSEAS EQPQGSEAMN EIAKNIGYSI PCSSSDGISN LDMKVTDDAR GFFSPLNFDP  480
CFGALDDFTR PGFDISENPF SFLPSGSCSF GQQNSDS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12929A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819567.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3L6RHU50.0A0A3L6RHU5_PANMI; Uncharacterized protein
STRINGPavir.J14096.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-162C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]