PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12903A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 271aa MW: 28570.3 Da PI: 10.2598

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12903A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.6	7.4e-15	188	240	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN +L e ee k+ Oropetium_20150105_12903A 188 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAELLREQEERHKK 240 689*************************************9887666554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-8	186	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	188	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.1E-14	188	241	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.09E-21	190	240	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-13	191	245	No hit	No description
SuperFamily	SSF57959	1.0E-10	191	237	No hit	No description
PROSITE pattern	PS00036	0	193	208	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MASSRVMSSP SHTASDLARF AQAASKPGGG GGSGLGSMNV EELLRGIYSD MPTPGLPSAP 60 GGGGDRPMSP APVSEMGPRR TAEEVWKDIT RGGGSAATGT VVAAAPPVVG AGAGAPTTGG 120 GAASEMTLED FLLRESAVKD DEVRISGPSA PVEGQVAMGF LGGPESVPGA GGGRGRKRQL 180 MDPVDRAAMQ RQKRMIKNRE SAARSRERKQ AYIAELESLV TQLEEENAEL LREQEERHKK 240 RLKELMERVT PVIVRKKPSR DLRRTNSMQW *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12903A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458823.1	1e-108	G-box-binding factor 4
Swissprot	Q0JHF1	1e-97	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0A9RIT5	1e-117	A0A0A9RIT5_ARUDO; Uncharacterized protein
STRING	Sb03g040970.1	1e-108	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-20	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12903A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]