PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12880A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 237aa    MW: 25969.9 Da    PI: 4.7579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12880AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.95.4e-4261392128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekewyfFskrdkkyatgkrknra 77 
                                ppG+rF Pt+eel+++yL++k++g ++++e+vi+ v++y+v+P++L +         +    + w++F++r++++a+g r++r+
  Oropetium_20150105_12880A   6 PPGYRFYPTEEELICFYLRNKLDGLRNDIERVIPVVEVYSVDPRQLSEihdsrlG--GggYGEPWFYFCPRQEREARGGRPSRT 87 
                                8****************************99***************854555332..2334569******************** PP

                        NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                t sgyWka g+  +v+s+ +++++g+kkt+vfy grap+g+kt+W m+eyrl
  Oropetium_20150105_12880A  88 TPSGYWKAAGTPGPVYSAgDRRAIGMKKTMVFYLGRAPSGTKTQWKMNEYRL 139
                                *****************977888***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-463144IPR003441NAC domain
PROSITE profilePS5100542.9125165IPR003441NAC domain
PfamPF023651.8E-246139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MANGRPPGYR FYPTEEELIC FYLRNKLDGL RNDIERVIPV VEVYSVDPRQ LSEIHDSRLG  60
GGGYGEPWFY FCPRQEREAR GGRPSRTTPS GYWKAAGTPG PVYSAGDRRA IGMKKTMVFY  120
LGRAPSGTKT QWKMNEYRLL QYDDAAAAAG ASSAAEERIQ SFDRRPLAGV AMVGTGEDPG  180
EDPGPSTAAM ASPDDNNGAS GSLQQQMRLM ERGGSDPYYG EDVMGALDDL LYWPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-30614118144NO APICAL MERISTEM PROTEIN
1ut4_B7e-30614118144NO APICAL MERISTEM PROTEIN
1ut7_A7e-30614118144NO APICAL MERISTEM PROTEIN
1ut7_B7e-30614118144NO APICAL MERISTEM PROTEIN
3swm_A9e-30614121147NAC domain-containing protein 19
3swm_B9e-30614121147NAC domain-containing protein 19
3swm_C9e-30614121147NAC domain-containing protein 19
3swm_D9e-30614121147NAC domain-containing protein 19
3swp_A9e-30614121147NAC domain-containing protein 19
3swp_B9e-30614121147NAC domain-containing protein 19
3swp_C9e-30614121147NAC domain-containing protein 19
3swp_D9e-30614121147NAC domain-containing protein 19
4dul_A7e-30614118144NAC domain-containing protein 19
4dul_B7e-30614118144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12880A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-131AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818071.11e-100NAC domain-containing protein 90-like
SwissprotQ9FMR31e-53NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A3L6RLX71e-100A0A3L6RLX7_PANMI; NAC domain-containing protein 90-like
STRINGSi002586m6e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-55NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]