PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12880A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 25969.9 Da PI: 4.7579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.9 | 5.4e-42 | 6 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekewyfFskrdkkyatgkrknra 77 ppG+rF Pt+eel+++yL++k++g ++++e+vi+ v++y+v+P++L + + + w++F++r++++a+g r++r+ Oropetium_20150105_12880A 6 PPGYRFYPTEEELICFYLRNKLDGLRNDIERVIPVVEVYSVDPRQLSEihdsrlG--GggYGEPWFYFCPRQEREARGGRPSRT 87 8****************************99***************854555332..2334569******************** PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t sgyWka g+ +v+s+ +++++g+kkt+vfy grap+g+kt+W m+eyrl Oropetium_20150105_12880A 88 TPSGYWKAAGTPGPVYSAgDRRAIGMKKTMVFYLGRAPSGTKTQWKMNEYRL 139 *****************977888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-46 | 3 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.912 | 5 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 6 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MANGRPPGYR FYPTEEELIC FYLRNKLDGL RNDIERVIPV VEVYSVDPRQ LSEIHDSRLG 60 GGGYGEPWFY FCPRQEREAR GGRPSRTTPS GYWKAAGTPG PVYSAGDRRA IGMKKTMVFY 120 LGRAPSGTKT QWKMNEYRLL QYDDAAAAAG ASSAAEERIQ SFDRRPLAGV AMVGTGEDPG 180 EDPGPSTAAM ASPDDNNGAS GSLQQQMRLM ERGGSDPYYG EDVMGALDDL LYWPSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-30 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-30 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-30 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-30 | 6 | 141 | 18 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swm_B | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swm_C | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swm_D | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_A | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_B | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_C | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
3swp_D | 9e-30 | 6 | 141 | 21 | 147 | NAC domain-containing protein 19 |
4dul_A | 7e-30 | 6 | 141 | 18 | 144 | NAC domain-containing protein 19 |
4dul_B | 7e-30 | 6 | 141 | 18 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12880A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-131 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818071.1 | 1e-100 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-53 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3L6RLX7 | 1e-100 | A0A3L6RLX7_PANMI; NAC domain-containing protein 90-like | ||||
STRING | Si002586m | 6e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-55 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12880A |
Publications ? help Back to Top | |||
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