PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12866A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 459aa MW: 50381.6 Da PI: 6.5117

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12866A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.9e-11	173	202	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Oropetium_20150105_12866A 173 AKTERRLAQNREAARKSRLRKKAYVQQLET 202 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-8	170	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.243	172	216	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-7	172	216	No hit	No description
Pfam	PF00170	4.0E-8	173	203	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.23E-7	174	217	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.3E-29	255	329	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MTSVRYCLGR DFQPAAAAAA YFGELEEALI HGGGVDHGGM IKSDVQTKSA GYLAARPPTL 60 EIFPSWPMRP QQQLHSGNSQ SVGSTTDSSS AQNTMSQMEL VSPASSAQRQ EVMMVTTDDY 120 SYKPGLAAAA AAPPTPAPAA APSFQQQTMQ LHGGDHDKRK HGSTRRDGNL VDAKTERRLA 180 QNREAARKSR LRKKAYVQQL ETSRIRLQQV EHELQRARSQ GLFVGGCSAA GDMSSGAAMF 240 DMEYARWLDD DNKRLADLRG GLQAQLLDGN LGLIVEECMQ HYDELFQLKA ELARSDVFHL 300 LTGSWATPAE RCFFWMGGFR PSELLKILMP QLDPLTDHQM LGICNLQQSS EQAEEALAQG 360 LHQLHQSLAD TVAAGTLNDG AAAPNYMNLM AVALEKLASL ESFYQQADNL RQQTLHQMRR 420 ILTTRQAARN FNGTESISPT AAELQVMHQQ QQNQFSGF*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MTSVRYCLGR DFQPAAAAAA YFGELEEALI HGGGVDHGGM IKSDVQTKSA GYLAARPPTL  60
EIFPSWPMRP QQQLHSGNSQ SVGSTTDSSS AQNTMSQMEL VSPASSAQRQ EVMMVTTDDY  120
SYKPGLAAAA AAPPTPAPAA APSFQQQTMQ LHGGDHDKRK HGSTRRDGNL VDAKTERRLA  180
QNREAARKSR LRKKAYVQQL ETSRIRLQQV EHELQRARSQ GLFVGGCSAA GDMSSGAAMF  240
DMEYARWLDD DNKRLADLRG GLQAQLLDGN LGLIVEECMQ HYDELFQLKA ELARSDVFHL  300
LTGSWATPAE RCFFWMGGFR PSELLKILMP QLDPLTDHQM LGICNLQQSS EQAEEALAQG  360
LHQLHQSLAD TVAAGTLNDG AAAPNYMNLM AVALEKLASL ESFYQQADNL RQQTLHQMRR  420
ILTTRQAARN FNGTESISPT AAELQVMHQQ QQNQFSGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12866A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008673408.1	0.0	transcription factor LG2 isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1R3PT62	0.0	A0A1R3PT62_MAIZE; Basic leucine zipper protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-113	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12866A

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]