PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12863A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 357aa    MW: 39914.8 Da    PI: 6.7317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12863AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-06196215120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C+ C+k+F+r  n++ H+
  Oropetium_20150105_12863A 196 FVCHVCNKTFNRYNNMQMHM 215
                                89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-5192219No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5196215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305196223IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SuperFamilySSF576674.67E-5264300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMASMIRHHQ EDVVLPDDGG EEEGARQKEV SSMRCLPLLS RLEEGKQRRP DDDQYRCRPP  60
IKEEITSGGA AASDASWRRS SGVDLNIGLP IGDDNDDEDA AMDDERDDPQ EEENYVDEEE  120
EEEERQESKK LMNGGCKAEG QQEELVAAAA SVEGSSSKII VGEFGPAGPE SGVTTAMGCR  180
YWIPTPTQIL IGPVQFVCHV CNKTFNRYNN MQMHMWGHGR EYRKGPDSLK GTQTLALLKL  240
PCYCCAPGCK NNIAHPRARP LKDFRTLQTH YKRKHGAKPF RCRRCAKPFA VKGDWRTHEK  300
NCGKRWFCAC GSDFKHKRSL NDHVRSFGAH HRPVDEPSAA TAKDHRAAIG EIGCYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12863A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819090.11e-144protein TRANSPARENT TESTA 1-like
TrEMBLA0A3L6SR921e-145A0A3L6SR92_PANMI; Uncharacterized protein
STRINGOS01T0859100-011e-142(Oryza sativa)
STRINGSb03g040490.11e-142(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.12e-93WIP domain protein 4