PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12834A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 46936.2 Da PI: 6.1498 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 118 | 164 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd +l++ v q+G + W+ Ia++++ gR +kqc++rw ++l Oropetium_20150105_12834A 118 KSSWTEEEDSILKHMVVQHGERKWSVIAQCLP-GRIGKQCRERWINHL 164 578*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 174 | 213 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++e+d ll++a++ +G++ W++Ia+++ gR+++ +k++w+ Oropetium_20150105_12834A 174 WSEEDDRLLINAHRHFGNR-WSSIAKHIS-GRSENAVKNHWN 213 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.445 | 113 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 117 | 166 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-28 | 117 | 212 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.5E-16 | 118 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 118 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.34E-16 | 120 | 164 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-18 | 167 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-14 | 170 | 218 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.813 | 170 | 220 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-14 | 174 | 213 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-13 | 174 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MADGSSSVPM EERQAPPLTA DWTPVRYFVS SGAHFQNGVA PASFVHAVGG DQFTVGAPFD 60 VSSVMTRIGM IPAAFEMPEG AYAATGFDAI RGVPAELAMA QQQLTGSNGS GRLPAPPKSS 120 WTEEEDSILK HMVVQHGERK WSVIAQCLPG RIGKQCRERW INHLRPDIKQ NDIWSEEDDR 180 LLINAHRHFG NRWSSIAKHI SGRSENAVKN HWNATLRSLK AKRRLKKKKS EQAPPGQYSA 240 LEEYIRSLYL LEDGVPPEAP PPSSTPPHFL AYDGSDHPAV VAPAPEVSSI PATNTEMMSF 300 HGDNSAVGSS NLGMINLNVP PQLPDLNTTT SDPQQEYYYM NYPVYVPAPP EPLLQLATHQ 360 EDTPQSCSSL DLFPYADYFA LLRTDYGNYH EGASSSNPSG ANGYYYSEAR RSRAAGGSGG 420 RPAGNTDNVV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-37 | 118 | 217 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 4e-37 | 118 | 217 | 4 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12834A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972257.1 | 1e-114 | transcription factor MYB80 | ||||
TrEMBL | K3XS58 | 1e-113 | K3XS58_SETIT; Uncharacterized protein | ||||
STRING | Si004755m | 1e-114 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 5e-40 | myb domain protein 64 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12834A |