PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12792A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 279aa MW: 29707.4 Da PI: 8.9085

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12792A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.8	1.9e-22	17	63	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +s e++sk Fslpi++AA+ Lgvc+ vLKriCR +GI RWP+Rk+ Oropetium_20150105_12792A 17 ALSYEEISKLFSLPIAEAASILGVCTNVLKRICRTHGIVRWPYRKLV 63 5899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.642	1	85	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-20	18	63	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MASNASAQPK PKPTRVALSY EEISKLFSLP IAEAASILGV CTNVLKRICR THGIVRWPYR 60 KLVSGKAGDD SKNSEREKAK ELLELSKAGK QKPFSSSGPS AMSSSSSQAA AKSQHGVSKT 120 GQISPPGKQN ASSGLALVSQ TRGIPTFMDE FKHGFPSSGL SCETLKWWGE SSHLDSAAPA 180 KDVNHEPETH DASKGMTDDE LDWGADEEGE ADGTVTAAEP SAQLCSLRRK AVDDGRKLLN 240 GDAYRGQQVF SRLNKRQKLV LAQVFGASLP VELNSVVV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12792A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140342.1	1e-129	uncharacterized protein LOC100272390
TrEMBL	A0A0A9PF78	1e-134	A0A0A9PF78_ARUDO; Uncharacterized protein
STRING	Pavir.J04809.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12792A