PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12783A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 580aa    MW: 62812.6 Da    PI: 7.9381
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12783AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.2e-103513881954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Oropetium_20150105_12783A 351 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 388
                                554459******************************88 PP
2BELL93.42.1e-30216285372
                       BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                 e q +k++L+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p++++Alka+++hF+cLk +i +q+
  Oropetium_20150105_12783A 216 XEQQWRKTRLISMMEEVCKRYRQYYQQVQAVMASFETVAGFPNAAPFAAMALKAMAKHFKCLKGMIQSQL 285
                                58899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.3E-35146283IPR006563POX domain
PfamPF075262.0E-34151281IPR006563POX domain
PROSITE profilePS5007112.179329392IPR001356Homeobox domain
CDDcd000862.23E-13332393No hitNo description
SMARTSM003896.5E-11332396IPR001356Homeobox domain
SuperFamilySSF466894.71E-17334400IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28335396IPR009057Homeodomain-like
PfamPF059206.1E-19349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSSAAGGYGG AAEHHHYHGE FLLHQHAQHL AGQLYHVPQH SRREKLRFPP DAGDSPPHAQ  60
HQHQHPGPWP PPTPPAAAFY SYASSSTSSY SPHSPTLAQQ LVTTTHGLAS QIPTQNFALS  120
LSSSSSNPPS ATTPRRPPTG PYGPFTGYAA VLGRSRFLVP AEKLLQEICD VGGAAAHVDR  180
SASDEGLLDA DPMEAIVDHD DMDAGXXXXX XXXXXXEQQW RKTRLISMME EVCKRYRQYY  240
QQVQAVMASF ETVAGFPNAA PFAAMALKAM AKHFKCLKGM IQSQLRNTIK VAAAKEGLSK  300
DITMFGLAPG GTTAALQRAT AMTAFGQPHN IWRPQRGLPE RAVAVLRAWL FEHFLHPYPT  360
DGDKQMLAKQ TGLTRNQVSN WFINARVRLW KPMVEEIHNL EMRQVQKHPA LDKSPHGMHH  420
QTQHSSECSG KPSDPSDSQL GQSSSITRNH NVPASHGFPD ELSQVSPSIQ GQVSFAAYNG  480
LSSATHHHHG LASSQHQHLG GGFSGAGNGG VSLTLGLQQN NKVCIAAEPL PASLSSNLAH  540
RFGLEDVSDA AYLMGSFGGQ DRHFAKEIVG GHLVHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16338396563Homeobox protein Meis2
3k2a_B3e-16338396563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12783A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGSi000753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.16e-53BEL1-like homeodomain 8